RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 NFXL1Q6ZNB6 911 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 IWS1Q96ST2 819 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 RMDN3Q96TC7 470 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 GPHNQ9NQX3 736 aaPredicted RBP24.63■■□□□ 1.53
HMGB3-205ENST00000455596 TMEM39AQ9NV64 488 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 MAP3K20Q9NYL2 800 aaKnown RBP24.63■■□□□ 1.53
HMGB3-205ENST00000455596 CCDC69A6NI79 296 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 SH2B2O14492 632 aaPredicted RBP24.62■■□□□ 1.53
HMGB3-205ENST00000455596 OPLAHO14841 1288 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 KIAA0355O15063 1070 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 KIF5BP33176 963 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 HSD17B4P51659 736 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 ARHGEF16Q5VV41 709 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 SAMD3Q8N6K7 520 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 OR6J1Q8NGC5 347 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 MYL10Q9BUA6 226 aa24.62■■□□□ 1.53
HMGB3-205ENST00000455596 PNMA6FA0A0J9YX94 578 aa24.61■■□□□ 1.53
HMGB3-205ENST00000455596 RAG1P15918 1043 aa24.61■■□□□ 1.53
HMGB3-205ENST00000455596 LIFRP42702 1097 aa24.61■■□□□ 1.53
HMGB3-205ENST00000455596 GHRHRQ02643 423 aa24.61■■□□□ 1.53
HMGB3-205ENST00000455596 LRCH3Q96II8 777 aa24.61■■□□□ 1.53
HMGB3-205ENST00000455596 TLR3O15455 904 aaKnown RBP24.6■■□□□ 1.53
HMGB3-205ENST00000455596 TXNP10599 105 aaKnown RBP24.6■■□□□ 1.53
HMGB3-205ENST00000455596 CPT1AP50416 773 aa24.6■■□□□ 1.53
HMGB3-205ENST00000455596 COL9A3Q14050 684 aaPredicted RBP24.6■■□□□ 1.53
HMGB3-205ENST00000455596 TTLL4Q14679 1199 aa24.6■■□□□ 1.53
HMGB3-205ENST00000455596 STXBP2Q15833 593 aa24.6■■□□□ 1.53
HMGB3-205ENST00000455596 PXMP2Q9NR77 195 aa24.6■■□□□ 1.53
HMGB3-205ENST00000455596 CALM1P0DP23 149 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 CALM2P0DP24 149 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 CALM3P0DP25 149 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 EIF2AK2P19525 551 aaKnown RBP24.59■■□□□ 1.53
HMGB3-205ENST00000455596 ITGB8P26012 769 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 GNAQP50148 359 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 ITGA7Q13683 1181 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 FAM126BQ8IXS8 530 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 SPZ1Q9BXG8 430 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 SEZ6LQ9BYH1 1024 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 POLR3EQ9NVU0 708 aa24.59■■□□□ 1.53
HMGB3-205ENST00000455596 RANBP2P49792 3224 aaKnown RBP24.58■■□□□ 1.53
HMGB3-205ENST00000455596 SMARCA1P28370 1054 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 BRDTQ58F21 947 aaPredicted RBP24.58■■□□□ 1.53
HMGB3-205ENST00000455596 SEPT14Q6ZU15 432 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 SLC43A3Q8NBI5 491 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 PIBF1Q8WXW3 757 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 NEK1Q96PY6 1258 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 LZTS2Q9BRK4 669 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 LRRC2Q9BYS8 371 aa24.58■■□□□ 1.53
HMGB3-205ENST00000455596 SCN10AQ9Y5Y9 1956 aa24.57■■□□□ 1.52
HMGB3-205ENST00000455596 ARIH2O95376 493 aa24.57■■□□□ 1.52
HMGB3-205ENST00000455596 NR3C2P08235 984 aa24.57■■□□□ 1.52
HMGB3-205ENST00000455596 COPS5Q92905 334 aa24.57■■□□□ 1.52
HMGB3-205ENST00000455596 RRP36Q96EU6 259 aaKnown RBP24.57■■□□□ 1.52
HMGB3-205ENST00000455596 TBX21Q9UL17 535 aa24.57■■□□□ 1.52
HMGB3-205ENST00000455596 SLC12A7Q9Y666 1083 aa24.57■■□□□ 1.52
HMGB3-205ENST00000455596 GCOM1H8Y6P7 765 aaPredicted RBP24.56■■□□□ 1.52
HMGB3-205ENST00000455596 EIF3JO75822 258 aaKnown RBP24.56■■□□□ 1.52
HMGB3-205ENST00000455596 TIMP1P01033 207 aa24.56■■□□□ 1.52
HMGB3-205ENST00000455596 MYL3P08590 195 aa24.56■■□□□ 1.52
HMGB3-205ENST00000455596 POLR2MP0CAP2 368 aa24.56■■□□□ 1.52
HMGB3-205ENST00000455596 HOXA13P31271 388 aaPredicted RBP24.56■■□□□ 1.52
HMGB3-205ENST00000455596 PSMC6P62333 389 aa24.56■■□□□ 1.52
HMGB3-205ENST00000455596 TSGA10IPQ3SY00 556 aa24.56■■□□□ 1.52
HMGB3-205ENST00000455596 CCDC62Q6P9F0 684 aa24.56■■□□□ 1.52
HMGB3-205ENST00000455596 SEC63Q9UGP8 760 aaKnown RBP24.56■■□□□ 1.52
HMGB3-205ENST00000455596 CD4P01730 458 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 RXRAP19793 462 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 PURAQ00577 322 aaKnown RBP24.55■■□□□ 1.52
HMGB3-205ENST00000455596 FPGSQ05932 587 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 KRT32Q14532 448 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 SHHQ15465 462 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 GPR153Q6NV75 609 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 SGMS1Q86VZ5 419 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 PDCD2LQ9BRP1 358 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 GRIN2DO15399 1336 aa24.55■■□□□ 1.52
HMGB3-205ENST00000455596 A6NJR5 290 aa24.54■■□□□ 1.52
HMGB3-205ENST00000455596 KPNA6O60684 536 aa24.54■■□□□ 1.52
HMGB3-205ENST00000455596 PLEKHA8P1O95397 391 aa24.54■■□□□ 1.52
HMGB3-205ENST00000455596 LY6KQ17RY6 165 aa24.54■■□□□ 1.52
HMGB3-205ENST00000455596 SYNE3Q6ZMZ3 975 aa24.54■■□□□ 1.52
HMGB3-205ENST00000455596 RASEFQ8IZ41 740 aa24.54■■□□□ 1.52
HMGB3-205ENST00000455596 SRBD1Q8N5C6 995 aaKnown RBP24.54■■□□□ 1.52
HMGB3-205ENST00000455596 GH1P01241 217 aa24.53■■□□□ 1.52
HMGB3-205ENST00000455596 MYCLP12524 364 aaPredicted RBP24.53■■□□□ 1.52
HMGB3-205ENST00000455596 PGM5Q15124 567 aa24.53■■□□□ 1.52
HMGB3-205ENST00000455596 ADCK5Q3MIX3 580 aa24.53■■□□□ 1.52
HMGB3-205ENST00000455596 C9orf50Q5SZB4 431 aa24.53■■□□□ 1.52
HMGB3-205ENST00000455596 DHX32Q7L7V1 743 aaKnown RBP24.53■■□□□ 1.52
HMGB3-205ENST00000455596 FCHSD1Q86WN1 690 aa24.53■■□□□ 1.52
HMGB3-205ENST00000455596 RAB11FIP4Q86YS3 637 aa24.53■■□□□ 1.52
HMGB3-205ENST00000455596 MTG1Q9BT17 334 aaPredicted RBP24.53■■□□□ 1.52
HMGB3-205ENST00000455596 EXOSC10Q01780 885 aaKnown RBP24.52■■□□□ 1.52
HMGB3-205ENST00000455596 MFSD5Q6N075 450 aa24.52■■□□□ 1.52
HMGB3-205ENST00000455596 MICU3Q86XE3 530 aa24.52■■□□□ 1.52
HMGB3-205ENST00000455596 FANCBQ8NB91 859 aa24.52■■□□□ 1.52
HMGB3-205ENST00000455596 MRVI1Q9Y6F6 885 aa24.52■■□□□ 1.52
HMGB3-205ENST00000455596 B4GALT4O60513 344 aa24.51■■□□□ 1.51
HMGB3-205ENST00000455596 VSIG10LQ86VR7 867 aa24.51■■□□□ 1.51
HMGB3-205ENST00000455596 CMTR1Q8N1G2 835 aaKnown RBP24.51■■□□□ 1.51
HMGB3-205ENST00000455596 TCEANC2Q96MN5 208 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms