RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 RPS6P62753 249 aaKnown RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 ERVK-9P63128 1117 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 ERVK-24P63145 666 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 GHRHRQ02643 423 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 BAATQ14032 418 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 PTPAQ15257 358 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 SF3A1Q15459 793 aaKnown RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 ZNF174Q15697 407 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 NSMFQ6X4W1 530 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 FAM177A1Q8N128 213 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 MB21D1Q8N884 522 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 SYTL5Q8TDW5 730 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 CRYGNQ8WXF5 182 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 TAAR1Q96RJ0 339 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 EFCC1Q9HA90 598 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 BRMS1Q9HCU9 246 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 A1CFQ9NQ94 594 aaKnown RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 BMP2KQ9NSY1 1161 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 ASTN1O14525 1302 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 CCDC194A0A1B0GVG4 234 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 GCOM1H8Y6P7 765 aaPredicted RBP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 GADD45BO75293 160 aaPredicted RBP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 POLR2MP0CAP2 368 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 MCM4P33991 863 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 NONOQ15233 471 aaKnown RBP eCLIP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 TAF1CQ15572 869 aaPredicted RBP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 NFKBIBQ15653 356 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 KRT25Q7Z3Z0 450 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 NCAPG2Q86XI2 1143 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 SMCR8Q8TEV9 937 aaPredicted RBP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 LEO1Q8WVC0 666 aaPredicted RBP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 ANO3Q9BYT9 981 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.54□□□□□ -0.4
SCN9A-205ENST00000454569 PNMA3Q9UL41 463 aa12.54□□□□□ -0.4
SCN9A-205ENST00000454569 TDP2O95551 362 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 CNTN2Q02246 1040 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 GRIN1Q05586 938 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 CRHR2Q13324 411 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 ANO1Q5XXA6 986 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 RNF207Q6ZRF8 634 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 C4orf32Q8N8J7 132 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 LINC00301Q8NCQ3 95 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 IL31RAQ8NI17 732 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 BICD2Q8TD16 824 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 DDX27Q96GQ7 796 aaKnown RBP12.53□□□□□ -0.4
SCN9A-205ENST00000454569 UIMC1Q96RL1 719 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 ACAD9Q9H845 621 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 CYP39A1Q9NYL5 469 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 RTEL1Q9NZ71 1219 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 MORF4L1Q9UBU8 362 aa12.53□□□□□ -0.4
SCN9A-205ENST00000454569 ARIH1Q9Y4X5 557 aaPredicted RBP12.53□□□□□ -0.4
SCN9A-205ENST00000454569 LRRC37A2A6NM11 1700 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 PRPF40AO75400 957 aaKnown RBP12.52□□□□□ -0.4
SCN9A-205ENST00000454569 BCRP11274 1271 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 NASPP49321 788 aaPredicted RBP12.52□□□□□ -0.4
SCN9A-205ENST00000454569 INHBEP58166 350 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 CAMK2BQ13554 666 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 LETM2Q2VYF4 491 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 RILPL1Q5EBL4 403 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 TTC38Q5R3I4 469 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 GPRC5AQ8NFJ5 357 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 CYP2W1Q8TAV3 490 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 GJA10Q969M2 543 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 TMEM60Q9H2L4 133 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 LMBRD1Q9NUN5 540 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 RCOR1Q9UKL0 485 aa12.52□□□□□ -0.4
SCN9A-205ENST00000454569 WDR81Q562E7 1941 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 SLC37A4O43826 429 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 PGK2P07205 417 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 CTGFP29279 349 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 MARCKSP29966 332 aaPredicted RBP12.52□□□□□ -0.41
SCN9A-205ENST00000454569 MCM7P33993 719 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 KRT85P78386 507 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 CAP1Q01518 475 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 TRAF1Q13077 416 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 NOGQ13253 232 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 IL17AQ16552 155 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 TKFCQ3LXA3 575 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 C17orf99Q6UX52 265 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 CHST13Q8NET6 341 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 FGD4Q96M96 766 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 ZNF396Q96N95 335 aaPredicted RBP12.52□□□□□ -0.41
SCN9A-205ENST00000454569 PARK7Q99497 189 aaKnown RBP12.52□□□□□ -0.41
SCN9A-205ENST00000454569 POLR3EQ9NVU0 708 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 ATP6V1DQ9Y5K8 247 aa12.52□□□□□ -0.41
SCN9A-205ENST00000454569 RPTORQ8N122 1335 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 SOWAHBA6NEL2 793 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 TLR2O60603 784 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 SREBF1P36956 1147 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 GCLCP48506 637 aaPredicted RBP12.51□□□□□ -0.41
SCN9A-205ENST00000454569 ARHGAP4P98171 946 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 SREBF2Q12772 1141 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 AP3B2Q13367 1082 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 SLC39A14Q15043 492 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 NEK8Q86SG6 692 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 MCF2L2Q86YR7 1114 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 SPATA32Q96LK8 384 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 GBP4Q96PP9 640 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 GLT8D2Q9H1C3 349 aa12.51□□□□□ -0.41
SCN9A-205ENST00000454569 THSD7BQ9C0I4 1608 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms