RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PRC1O43663 620 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 CYTH3O43739 400 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 DDAH1O94760 285 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 MCM5P33992 734 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 CPT1AP50416 773 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 TRAF1Q13077 416 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 PPP2R5BQ15173 497 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 CXCL17Q6UXB2 119 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 TAAR1Q96RJ0 339 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 IWS1Q96ST2 819 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 RMDN3Q96TC7 470 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 TMEM39AQ9NV64 488 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 PCDHA1Q9Y5I3 950 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 DOCK5Q9H7D0 1870 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 TLR3O15455 904 aaKnown RBP13.98□□□□□ -0.17
USP40-210ENST00000454354 CDC45O75419 566 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 TIMP1P01033 207 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 CD4P01730 458 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 RAG1P15918 1043 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 LIFRP42702 1097 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 COL9A3Q14050 684 aaPredicted RBP13.98□□□□□ -0.17
USP40-210ENST00000454354 CASC1Q6TDU7 716 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 ZNF654Q8IZM8 581 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 VTI1AQ96AJ9 217 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 TMEM87BQ96K49 555 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 PIGSQ96S52 555 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 SPZ1Q9BXG8 430 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 POLR3EQ9NVU0 708 aa13.98□□□□□ -0.17
USP40-210ENST00000454354 GBF1Q92538 1859 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 GRIN2DO15399 1336 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 PNMA6FA0A0J9YX94 578 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 A6NJR5 290 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 ARIH2O95376 493 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 CFBP00751 764 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 SMARCA1P28370 1054 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 PURAQ00577 322 aaKnown RBP13.97□□□□□ -0.17
USP40-210ENST00000454354 ITGA7Q13683 1181 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 TTLL4Q14679 1199 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 C9orf50Q5SZB4 431 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 CCDC62Q6P9F0 684 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 HOMER1Q86YM7 354 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 TMTC2Q8N394 836 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 OR6J1Q8NGC5 347 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 GPHNQ9NQX3 736 aaPredicted RBP13.97□□□□□ -0.17
USP40-210ENST00000454354 PXMP2Q9NR77 195 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 SCN5AQ14524 2016 aa13.97□□□□□ -0.17
USP40-210ENST00000454354 TRIP12Q14669 1992 aaPredicted RBP13.96□□□□□ -0.17
USP40-210ENST00000454354 TXNP10599 105 aaKnown RBP13.96□□□□□ -0.17
USP40-210ENST00000454354 EIF2AK2P19525 551 aaKnown RBP13.96□□□□□ -0.17
USP40-210ENST00000454354 KIF5BP33176 963 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 FPGSQ05932 587 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 SHHQ15465 462 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 STXBP2Q15833 593 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 TSGA10IPQ3SY00 556 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 BRDTQ58F21 947 aaPredicted RBP13.96□□□□□ -0.17
USP40-210ENST00000454354 RNF20Q5VTR2 975 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 ARHGEF16Q5VV41 709 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 MFSD5Q6N075 450 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 SGMS1Q86VZ5 419 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 CTCFLQ8NI51 663 aaPredicted RBP13.96□□□□□ -0.17
USP40-210ENST00000454354 COPS5Q92905 334 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 CCDC136Q96JN2 1154 aa13.96□□□□□ -0.17
USP40-210ENST00000454354 FRMPD4Q14CM0 1322 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 KPNA6O60684 536 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 EIF3JO75822 258 aaKnown RBP13.95□□□□□ -0.18
USP40-210ENST00000454354 NR3C2P08235 984 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 CALM1P0DP23 149 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 CALM2P0DP24 149 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 CALM3P0DP25 149 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 EPHB4P54760 987 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 LZTS2Q9BRK4 669 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 PDCD2LQ9BRP1 358 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 MTG1Q9BT17 334 aaPredicted RBP13.95□□□□□ -0.18
USP40-210ENST00000454354 MYL10Q9BUA6 226 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 CDH23Q9H251 3354 aa13.95□□□□□ -0.18
USP40-210ENST00000454354 CCDC69A6NI79 296 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 GCOM1H8Y6P7 765 aaPredicted RBP13.94□□□□□ -0.18
USP40-210ENST00000454354 POLR2MP0CAP2 368 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 GNAQP50148 359 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 PSMC6P62333 389 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 ARHGAP1Q07960 439 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 PGM5Q15124 567 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 FAM109BQ6ICB4 259 aaPredicted RBP13.94□□□□□ -0.18
USP40-210ENST00000454354 NFXL1Q6ZNB6 911 aa13.94□□□□□ -0.18
USP40-210ENST00000454354 EMID1Q96A84 441 aaPredicted RBP13.94□□□□□ -0.18
USP40-210ENST00000454354 B4GALT4O60513 344 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 RGS20O76081 388 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 PLEKHA8P1O95397 391 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 GH1P01241 217 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 MYL3P08590 195 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 HOXA13P31271 388 aaPredicted RBP13.93□□□□□ -0.18
USP40-210ENST00000454354 EXOSC10Q01780 885 aaKnown RBP13.93□□□□□ -0.18
USP40-210ENST00000454354 PPIGQ13427 754 aaKnown RBP eCLIP13.93□□□□□ -0.186e-12■■□□□ 14
USP40-210ENST00000454354 LY6KQ17RY6 165 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 SEPT14Q6ZU15 432 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 VSIG10LQ86VR7 867 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 SRBD1Q8N5C6 995 aaKnown RBP13.93□□□□□ -0.18
USP40-210ENST00000454354 DEFB123Q8N688 67 aa13.93□□□□□ -0.18
USP40-210ENST00000454354 RRP36Q96EU6 259 aaKnown RBP13.93□□□□□ -0.18
USP40-210ENST00000454354 NEK1Q96PY6 1258 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms