RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 MDM2Q00987 491 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-202ENST00000452372 TDHQ8IZJ6 230 aa23.03■■□□□ 1.28
COL9A3-202ENST00000452372 KATNBL1Q9H079 304 aa23.03■■□□□ 1.28
COL9A3-202ENST00000452372 hCG_1642624A0A1W2PR95 340 aa23.02■■□□□ 1.28
COL9A3-202ENST00000452372 ADCYAP1R1P41586 468 aa23.02■■□□□ 1.28
COL9A3-202ENST00000452372 SNX17Q15036 470 aa23.02■■□□□ 1.28
COL9A3-202ENST00000452372 TAAR1Q96RJ0 339 aa23.02■■□□□ 1.28
COL9A3-202ENST00000452372 COL20A1Q9P218 1284 aa23.02■■□□□ 1.28
COL9A3-202ENST00000452372 V9GY48 417 aaPredicted RBP23.02■■□□□ 1.28
COL9A3-202ENST00000452372 AKR1A1P14550 325 aa23.01■■□□□ 1.27
COL9A3-202ENST00000452372 MPHOSPH6Q99547 160 aaKnown RBP23.01■■□□□ 1.27
COL9A3-202ENST00000452372 ZHX1Q9UKY1 873 aaPredicted RBP23.01■■□□□ 1.27
COL9A3-202ENST00000452372 FAM184BQ9ULE4 1060 aa23.01■■□□□ 1.27
COL9A3-202ENST00000452372 B4DLN1 442 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 KBTBD13C9JR72 458 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 GCOM1H8Y6P7 765 aaPredicted RBP23■■□□□ 1.27
COL9A3-202ENST00000452372 POLR2MP0CAP2 368 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 EDNRBP24530 442 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 MRPL12P52815 198 aaKnown RBP23■■□□□ 1.27
COL9A3-202ENST00000452372 CCT2P78371 535 aaKnown RBP23■■□□□ 1.27
COL9A3-202ENST00000452372 ANKRD1Q15327 319 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 NSUN6Q8TEA1 469 aaKnown RBP23■■□□□ 1.27
COL9A3-202ENST00000452372 FERMT2Q96AC1 680 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 LARP6Q9BRS8 491 aaKnown RBP23■■□□□ 1.27
COL9A3-202ENST00000452372 C22orf23Q9BZE7 217 aa23■■□□□ 1.27
COL9A3-202ENST00000452372 DDX49Q9Y6V7 483 aaKnown RBP23■■□□□ 1.27
COL9A3-202ENST00000452372 NEK4P51957 841 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 NTRK3Q16288 839 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 CCDC144BQ3MJ40 725 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 GPR153Q6NV75 609 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 RMDN3Q96TC7 470 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 VTA1Q9NP79 307 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 XPNPEP3Q9NQH7 507 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 PHF24Q9UPV7 400 aa22.99■■□□□ 1.27
COL9A3-202ENST00000452372 PGK1P00558 417 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 MYCNP04198 464 aaPredicted RBP22.98■■□□□ 1.27
COL9A3-202ENST00000452372 RARBP10826 455 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 HOXA13P31271 388 aaPredicted RBP22.98■■□□□ 1.27
COL9A3-202ENST00000452372 AK2P54819 239 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 C1orf53Q5VUE5 145 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 HEATR3Q7Z4Q2 680 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 LENG1Q96BZ8 264 aaPredicted RBP22.98■■□□□ 1.27
COL9A3-202ENST00000452372 IWS1Q96ST2 819 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 ATP11BQ9Y2G3 1177 aa22.98■■□□□ 1.27
COL9A3-202ENST00000452372 LTBP2Q14767 1821 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 PRPF3O43395 683 aaKnown RBP22.97■■□□□ 1.27
COL9A3-202ENST00000452372 IFNAR1P17181 557 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 RBM25P49756 843 aaKnown RBP22.97■■□□□ 1.27
COL9A3-202ENST00000452372 PDE4DQ08499 809 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 TRIM60Q495X7 471 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 ARHGEF16Q5VV41 709 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 TAPT1Q6NXT6 567 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 EEPD1Q7L9B9 569 aa22.97■■□□□ 1.27
COL9A3-202ENST00000452372 NCOA5Q9HCD5 579 aaKnown RBP22.97■■□□□ 1.27
COL9A3-202ENST00000452372 hCG_1984214I3L0E3 225 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 PIK3CDO00329 1044 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 ADAMTS4O75173 837 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 WWC2Q6AWC2 1192 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 IQSEC1Q6DN90 963 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 SH3RF1Q7Z6J0 888 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 FBXO16Q8IX29 292 aaPredicted RBP22.96■■□□□ 1.27
COL9A3-202ENST00000452372 ZNF713Q8N859 430 aaPredicted RBP22.96■■□□□ 1.27
COL9A3-202ENST00000452372 GPKOWQ92917 476 aaPredicted RBP eCLIP22.96■■□□□ 1.27
COL9A3-202ENST00000452372 KIF2CQ99661 725 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 PSTPIP2Q9H939 334 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 PXMP2Q9NR77 195 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 TPCN1Q9ULQ1 816 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 LRRC37A2A6NM11 1700 aa22.96■■□□□ 1.27
COL9A3-202ENST00000452372 TRIM43BA6NCK2 446 aa22.95■■□□□ 1.26
COL9A3-202ENST00000452372 MEIS2O14770 477 aa22.95■■□□□ 1.26
COL9A3-202ENST00000452372 DUSP11O75319 330 aaKnown RBP22.95■■□□□ 1.26
COL9A3-202ENST00000452372 STK3Q13188 491 aa22.95■■□□□ 1.26
COL9A3-202ENST00000452372 PFKFB3Q16875 520 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-202ENST00000452372 Q7L0L9 218 aa22.95■■□□□ 1.26
COL9A3-202ENST00000452372 PHKBQ93100 1093 aa22.95■■□□□ 1.26
COL9A3-202ENST00000452372 TRIM43Q96BQ3 446 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-202ENST00000452372 RNF26Q9BY78 433 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-202ENST00000452372 UPF2Q9HAU5 1272 aaKnown RBP22.95■■□□□ 1.26
COL9A3-202ENST00000452372 PDGFCQ9NRA1 345 aa22.95■■□□□ 1.26
COL9A3-202ENST00000452372 RBM47A0AV96 593 aaKnown RBP22.94■■□□□ 1.26
COL9A3-202ENST00000452372 ADCY6O43306 1168 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 PFKFB2O60825 505 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 EIF2AK2P19525 551 aaKnown RBP22.94■■□□□ 1.26
COL9A3-202ENST00000452372 IRX5P78411 483 aaPredicted RBP22.94■■□□□ 1.26
COL9A3-202ENST00000452372 AKAP17AQ02040 695 aaKnown RBP22.94■■□□□ 1.26
COL9A3-202ENST00000452372 TNFAIP2Q03169 654 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 TLE2Q04725 743 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 STXBP2Q15833 593 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 CCSAPQ6IQ19 270 aaPredicted RBP22.94■■□□□ 1.26
COL9A3-202ENST00000452372 TYW1BQ6NUM6 668 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 PPP1R18Q6NYC8 613 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 USP17L6PQ6QN14 398 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 FCHSD1Q86WN1 690 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 KLHDC9Q8NEP7 349 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 CUL5Q93034 780 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 SLKQ9H2G2 1235 aaPredicted RBP22.94■■□□□ 1.26
COL9A3-202ENST00000452372 PDLIM7Q9NR12 457 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 BARHL2Q9NY43 387 aa22.94■■□□□ 1.26
COL9A3-202ENST00000452372 A0A0C4DFX4 3053 aa22.93■■□□□ 1.26
COL9A3-202ENST00000452372 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms