RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 MCPH1Q8NEM0 835 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 KLHDC4Q8TBB5 520 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 IFT81Q8WYA0 676 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 MRPL47Q9HD33 250 aaKnown RBP9.34□□□□□ -0.91
PTPN3-204ENST00000446349 RBM46Q8TBY0 533 aaKnown RBP9.34□□□□□ -0.91
PTPN3-204ENST00000446349 LZTFL1Q9NQ48 299 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 HNRNPDLO14979 420 aaKnown RBP9.34□□□□□ -0.91
PTPN3-204ENST00000446349 GSDMAQ96QA5 445 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 HAUS8Q9BT25 410 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 RBSNQ9H1K0 784 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 KMT5AQ9NQR1 393 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 TOPORSQ9NS56 1045 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-204ENST00000446349 NFE2L3Q9Y4A8 694 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 MED14O60244 1454 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 COL15A1P39059 1388 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 AGLP35573 1532 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 USP17L5A8MUK1 530 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 TECP42680 631 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 C8orf34Q49A92 452 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 NBPF11Q86T75 865 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 DGKHQ86XP1 1220 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 WDR19Q8NEZ3 1342 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 S100BP04271 92 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-204ENST00000446349 MECOMQ03112 1051 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 C1orf228Q6PIY5 440 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 SDR42E1Q8WUS8 393 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 C2orf40Q9H1Z8 148 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 ST7Q9NRC1 585 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 CCDC62Q6P9F0 684 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 TRPV6Q9H1D0 765 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 TMX1Q9H3N1 280 aa9.34□□□□□ -0.91
PTPN3-204ENST00000446349 WDR64B1ANS9 1081 aa9.34□□□□□ -0.92
PTPN3-204ENST00000446349 M0R2C6 588 aa9.34□□□□□ -0.92
PTPN3-204ENST00000446349 SLC26A4O43511 780 aa9.34□□□□□ -0.92
PTPN3-204ENST00000446349 NEDD9Q14511 834 aa9.34□□□□□ -0.92
PTPN3-204ENST00000446349 STMN2Q93045 179 aa9.34□□□□□ -0.92
PTPN3-204ENST00000446349 IFIH1Q9BYX4 1025 aaKnown RBP9.34□□□□□ -0.92
PTPN3-204ENST00000446349 BRPF3Q9ULD4 1205 aa9.34□□□□□ -0.92
PTPN3-204ENST00000446349 ABCB11O95342 1321 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 LIFRP42702 1097 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 NSFP46459 744 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 ARL13BQ3SXY8 428 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 RSRC2Q7L4I2 434 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 CCDC105Q8IYK2 499 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 PPFIBP2Q8ND30 876 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 DIP2AQ14689 1571 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 ESYT2A0FGR8 921 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 ECM2O94769 699 aaPredicted RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 CYP2J2P51589 502 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 HSP90AA4PQ58FG1 418 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 ARL6IP4Q66PJ3 421 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 TBC1D22BQ9NU19 505 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 EEF1GP26641 437 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 STXBP2Q15833 593 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 VPS72Q15906 364 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 DENND2CQ68D51 928 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 PHKA1P46020 1223 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 SP8Q8IXZ3 490 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 HSPA6P17066 643 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 SFNP31947 248 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 CERKQ8TCT0 537 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 NLRP7Q8WX94 980 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 LARP4BQ92615 738 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 MXD3Q9BW11 206 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 LSM14BQ9BX40 385 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 ZSWIM4Q9H7M6 989 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 XRCC6P12956 609 aaKnown RBP eCLIP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 MCM6Q14566 821 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 TTLL4Q14679 1199 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 UAP1Q16222 522 aaPredicted RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 NCOA5Q9HCD5 579 aaKnown RBP9.33□□□□□ -0.92
PTPN3-204ENST00000446349 KIAA1468Q9P260 1216 aa9.33□□□□□ -0.92
PTPN3-204ENST00000446349 A0A1W2PQ27 194 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 A0A1W2PQ64 194 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 A0A1W2PQD8 194 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 PIGBQ92521 554 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ERO1AQ96HE7 468 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ANO3Q9BYT9 981 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 LMCD1Q9NZU5 365 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ZNF335Q9H4Z2 1342 aaPredicted RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 INO80B-WBP1J3KQ70 363 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 MORC3Q14149 939 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 EAF2Q96CJ1 260 aaPredicted RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 CAPZA3Q96KX2 299 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 USTQ9Y2C2 406 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 MYL7Q01449 175 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 EFHBQ8N7U6 833 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RNF139Q8WU17 664 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RPF1Q9H9Y2 349 aaKnown RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RPN1P04843 607 aaKnown RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RPLP2P05387 115 aaKnown RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ARHGAP4P98171 946 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 HHATQ5VTY9 493 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 SRRM1Q8IYB3 904 aaKnown RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 TTC25Q96NG3 672 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 PARVGQ9HBI0 331 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RGS12O14924 1447 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 KCNJ18B7U540 433 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 HSPA1LP34931 641 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 KCNJ12Q14500 433 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms