RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CASP8Q14790 479 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 MAN2A1Q16706 1144 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 CNBD1Q8NA66 436 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 SLC44A5Q8NCS7 719 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 TRIM58Q8NG06 486 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 ADAM21Q9UKJ8 722 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 USO1O60763 962 aaKnown RBP15.22■□□□□ 0.03
COL6A3-207ENST00000433762 RHBDL3P58872 404 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 EHHADHQ08426 723 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 KIF5AQ12840 1032 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 PPP4R3AQ6IN85 833 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 TMC4Q7Z404 712 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 KIAA0895Q8NCT3 520 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 LARP4BQ92615 738 aaKnown RBP15.22■□□□□ 0.03
COL6A3-207ENST00000433762 UBR3Q6ZT12 1888 aa15.22■□□□□ 0.03
COL6A3-207ENST00000433762 H3BQF6 201 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 PES1O00541 588 aaKnown RBP15.21■□□□□ 0.03
COL6A3-207ENST00000433762 RPS6KA5O75582 802 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 GRB10Q13322 594 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 SPA17Q15506 151 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 CALCRLQ16602 461 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 TMEM119Q4V9L6 283 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 VWA3BQ502W6 1294 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 CCDC155Q8N6L0 562 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 NUCKS1Q9H1E3 243 aaKnown RBP15.21■□□□□ 0.03
COL6A3-207ENST00000433762 AGPAT5Q9NUQ2 364 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 SIK3Q9Y2K2 1263 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 IGKV6D-41A0A0C4DH26 115 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 GCFC2P16383 781 aaKnown RBP15.21■□□□□ 0.03
COL6A3-207ENST00000433762 RFC4P35249 363 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 ADCY7P51828 1080 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 TRAPPC3LQ5T215 181 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 NOA1Q8NC60 698 aaKnown RBP15.21■□□□□ 0.03
COL6A3-207ENST00000433762 CEP95Q96GE4 821 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 GLT8D2Q9H1C3 349 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 BLOC1S4Q9NUP1 217 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 LRWD1Q9UFC0 647 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 JRKLQ9Y4A0 524 aa15.21■□□□□ 0.03
COL6A3-207ENST00000433762 RHOXF2BP0C7M4 288 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 PDHBP11177 359 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 TECP42680 631 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 GRIK5Q16478 980 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 HSP90B2PQ58FF3 399 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 HYIQ5T013 277 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 PTF1AQ7RTS3 328 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 GOLGA5Q8TBA6 731 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 RAD54LQ92698 747 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 SECISBP2LQ93073 1101 aaKnown RBP15.2■□□□□ 0.02
COL6A3-207ENST00000433762 CCDC42Q96M95 316 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 PIGSQ96S52 555 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 RHOXF2Q9BQY4 288 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 SEMA6BQ9H3T3 888 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 PDE11AQ9HCR9 933 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 CWC15Q9P013 229 aaKnown RBP15.2■□□□□ 0.02
COL6A3-207ENST00000433762 GGA1Q9UJY5 639 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 PJA2O43164 708 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 BBOX1O75936 387 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 ATP1A1P05023 1023 aaKnown RBP15.2■□□□□ 0.02
COL6A3-207ENST00000433762 GOLGA8HP0CJ92 632 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 GABPAQ06546 454 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 NFIXQ14938 502 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 NCAPH2Q6IBW4 605 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 CCDC70Q6NSX1 233 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 KRT27Q7Z3Y8 459 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 SYN2Q92777 582 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-207ENST00000433762 RPGRQ92834 1020 aaKnown RBP15.2■□□□□ 0.02
COL6A3-207ENST00000433762 PNMA5Q96PV4 448 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 NDST4Q9H3R1 872 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 SWAP70Q9UH65 585 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 SAP30BPQ9UHR5 308 aaKnown RBP15.2■□□□□ 0.02
COL6A3-207ENST00000433762 JAG2Q9Y219 1238 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 BRWD3Q6RI45 1802 aa15.2■□□□□ 0.02
COL6A3-207ENST00000433762 SSU72P8A0A1W2PR75 194 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 TACC1O75410 805 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 GPSM2P81274 684 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 USP17L2Q6R6M4 530 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 POTEDQ86YR6 584 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 MMGT1Q8N4V1 131 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 RBM17Q96I25 401 aaKnown RBP15.19■□□□□ 0.02
COL6A3-207ENST00000433762 CDK5RAP3Q96JB5 506 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 TSG101Q99816 390 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 TSPYL1Q9H0U9 437 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 MTMR4Q9NYA4 1195 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 KIF13BQ9NQT8 1826 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 KDM3AQ9Y4C1 1321 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 ERICH4A6NGS2 130 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 CLSTN1O94985 981 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 FCER1AP12319 257 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 RXRBP28702 533 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 HOXA10P31260 410 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-207ENST00000433762 ST5P78524 1137 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 MAPK8IP2Q13387 824 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-207ENST00000433762 MCM6Q14566 821 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 KRT79Q5XKE5 535 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 PLIN2Q99541 437 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 SH2D4AQ9H788 454 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 TRIM10Q9UDY6 481 aa15.19■□□□□ 0.02
COL6A3-207ENST00000433762 MYMKA6NI61 221 aa15.18■□□□□ 0.02
COL6A3-207ENST00000433762 UFL1O94874 794 aa15.18■□□□□ 0.02
COL6A3-207ENST00000433762 CLK2P49760 499 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms