RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 MEA1Q16626 185 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 DTHD1Q6ZMT9 781 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 HDXQ7Z353 690 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 TSEN2Q8NCE0 465 aaKnown RBP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 COA7Q96BR5 231 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 MS4A14Q96JA4 679 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 TRIM34Q9BYJ4 488 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 CRNKL1Q9BZJ0 848 aaKnown RBP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 CALCOCO1Q9P1Z2 691 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 LUC7L2Q9Y383 392 aaKnown RBP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 PALM3A6NDB9 673 aaPredicted RBP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 USP17L5A8MUK1 530 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 MYO1CO00159 1063 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 LONP1P36776 959 aaKnown RBP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 TNNT3P45378 269 aaPredicted RBP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 ASIC1P78348 528 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 WHAMMP3Q1A5X7 153 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 MUM1L1Q5H9M0 696 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 CABP7Q86V35 215 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 CREG2Q8IUH2 290 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 TNS4Q8IZW8 715 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 EXOC4Q96A65 974 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 CCDC51Q96ER9 411 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 GOLPH3Q9H4A6 298 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 BARHL2Q9NY43 387 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 NPHP3-ACAD11A0A0J9YXS1 232 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 KLRF2D3W0D1 207 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PPP1R11O60927 126 aaPredicted RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 CALM1P0DP23 149 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 CALM2P0DP24 149 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 CALM3P0DP25 149 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TRIM21P19474 475 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TXKP42681 527 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TBC1D8BQ0IIM8 1120 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 UBE2SQ16763 222 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 FAM98CQ17RN3 349 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 COL13A1Q5TAT6 717 aaPredicted RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PAPD7Q5XG87 772 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 ARL6IP4Q66PJ3 421 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 DZIP1Q86YF9 867 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 LRRC47Q8N1G4 583 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 P2RX5Q93086 422 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 MTMR8Q96EF0 704 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PURBQ96QR8 312 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SYT17Q9BSW7 474 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 LRRC1Q9BTT6 524 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PODXL2Q9NZ53 605 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TBC1D7Q9P0N9 293 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PACSIN2Q9UNF0 486 aaPredicted RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SIK3Q9Y2K2 1263 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 FARP1Q9Y4F1 1045 aaPredicted RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SAR1BQ9Y6B6 198 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 ARFGEF1Q9Y6D6 1849 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 ESYT3A0FGR9 886 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 H7C1D1 291 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 BUB1O43683 1085 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TLR2O60603 784 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 ACTN2P35609 894 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 UBA7P41226 1012 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PTGER2P43116 358 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TRAPPC10P48553 1259 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 GFPT1Q06210 699 aaPredicted RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 PPP2R5BQ15173 497 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SBK1Q52WX2 424 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SLC30A10Q6XR72 485 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 KIAA1328Q86T90 577 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SRLQ86TD4 932 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TXLNBQ8N3L3 684 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 TBCKQ8TEA7 893 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 CEP95Q96GE4 821 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 SELENOOQ9BVL4 669 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 MXD3Q9BW11 206 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 IKZF4Q9H2S9 585 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 EXOC1Q9NV70 894 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 ARPP21Q9UBL0 812 aaPredicted RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 RRP15Q9Y3B9 282 aaKnown RBP8.01□□□□□ -1.13
COL28A1-202ENST00000430711 COL24A1Q17RW2 1714 aa8.01□□□□□ -1.13
COL28A1-202ENST00000430711 MYH7BA7E2Y1 1941 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 LRRC53A6NM62 1247 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 TSPY3P0CV98 308 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 TSPY8P0CW00 308 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 IDEP14735 1019 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 EIF4A3P38919 411 aaKnown RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 SLC1A4P43007 532 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 MTIF2P46199 727 aaKnown RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 NAPAP54920 295 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 DNAJC21Q5F1R6 531 aaKnown RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 WDR93Q6P2C0 686 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 TMED8Q6PL24 325 aaPredicted RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 FAM196AQ6ZSG2 479 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 C2CD5Q86YS7 1000 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 PCMTD1Q96MG8 357 aaPredicted RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 NOC4LQ9BVI4 516 aaKnown RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 PACSIN1Q9BY11 444 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 RTFDC1Q9BY42 306 aaPredicted RBP8□□□□□ -1.13
COL28A1-202ENST00000430711 CCSER1Q9C0I3 900 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 THAP9Q9H5L6 903 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 MKNK2Q9HBH9 465 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 LRRC4CQ9HCJ2 640 aa8□□□□□ -1.13
COL28A1-202ENST00000430711 ATP8A2Q9NTI2 1148 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms