RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SYNPOQ8N3V7 929 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 USP33Q8TEY7 942 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 DPF3Q92784 378 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 SHISA4Q96DD7 197 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 ZFYVE21Q9BQ24 234 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 ACSL6Q9UKU0 697 aa6.06□□□□□ -1.44
USP40-204ENST00000427947 LOC105371045A0A1W2PR82 267 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 PPP1R11O60927 126 aaPredicted RBP6.05□□□□□ -1.44
USP40-204ENST00000427947 EFCAB14O75071 495 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 FUCA1P04066 466 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 FPR2P25090 351 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 HSD3B2P26439 372 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 GPR85P60893 370 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 C21orf62-AS1Q17RA5 79 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 TRIM61Q5EBN2 209 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 BICRALQ6AI39 1079 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 LBX2Q6XYB7 198 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 NLRP10Q86W26 655 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 LZTR1Q8N653 840 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 NLGN2Q8NFZ4 835 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 SLC7A14Q8TBB6 771 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 FAM168AQ92567 244 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 TMEM169Q96HH4 297 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 FEZ1Q99689 392 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 PDLIM7Q9NR12 457 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 FBLN5Q9UBX5 448 aa6.05□□□□□ -1.44
USP40-204ENST00000427947 YBX2Q9Y2T7 364 aaKnown RBP6.05□□□□□ -1.44
USP40-204ENST00000427947 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.04□□□□□ -1.44
USP40-204ENST00000427947 C22orf46C9J442 243 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 CRTAMO95727 393 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 GLI1P08151 1106 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 ITGB5P18084 799 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 SDHBP21912 280 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 RBM10P98175 930 aaKnown RBP6.04□□□□□ -1.44
USP40-204ENST00000427947 LSAMPQ13449 338 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 KIZQ2M2Z5 673 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 FNDC3BQ53EP0 1204 aaKnown RBP6.04□□□□□ -1.44
USP40-204ENST00000427947 PLEKHG4Q58EX7 1191 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 ADGRF1Q5T601 910 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 CEP68Q76N32 757 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 BRAPQ7Z569 592 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 KIAA0907Q7Z7F0 614 aaPredicted RBP6.04□□□□□ -1.44
USP40-204ENST00000427947 GSTCDQ8NEC7 633 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.04□□□□□ -1.44
USP40-204ENST00000427947 CLUHP3Q96NS8 147 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 ALG1Q9BT22 464 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 CRTAC1Q9NQ79 661 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 CLDND1Q9NY35 253 aa6.04□□□□□ -1.44
USP40-204ENST00000427947 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.04□□□□□ -1.44
USP40-204ENST00000427947 PPARGC1AQ9UBK2 798 aaKnown RBP6.04□□□□□ -1.44
USP40-204ENST00000427947 CLSTN1O94985 981 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 RASGRP1O95267 797 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 APPP05067 770 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 PNLIPP16233 465 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 GRK2P25098 689 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 GRK3P35626 688 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 PDE6BP35913 854 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 GUCY1A3Q02108 690 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 PABPC4Q13310 644 aaKnown RBP eCLIP6.03□□□□□ -1.44
USP40-204ENST00000427947 FGD2Q7Z6J4 655 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 CABP7Q86V35 215 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 TRMT2BQ96GJ1 504 aaKnown RBP6.03□□□□□ -1.44
USP40-204ENST00000427947 INTS4Q96HW7 963 aaKnown RBP6.03□□□□□ -1.44
USP40-204ENST00000427947 MTA3Q9BTC8 594 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 SLC6A17Q9H1V8 727 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 PCDHA9Q9Y5H5 950 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 PCDHA8Q9Y5H6 950 aa6.03□□□□□ -1.44
USP40-204ENST00000427947 H7BY64 318 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 SOD2P04179 222 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 JUNBP17275 347 aaPredicted RBP6.02□□□□□ -1.45
USP40-204ENST00000427947 NAT1P18440 290 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 MPZL3Q6UWV2 235 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 PLEKHO2Q8TD55 490 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 MAGEB10Q96LZ2 347 aaPredicted RBP6.02□□□□□ -1.45
USP40-204ENST00000427947 SLKQ9H2G2 1235 aaPredicted RBP6.02□□□□□ -1.45
USP40-204ENST00000427947 TRIM39Q9HCM9 518 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 TNFRSF12AQ9NP84 129 aa6.02□□□□□ -1.45
USP40-204ENST00000427947 COA3Q9Y2R0 106 aaPredicted RBP6.02□□□□□ -1.45
USP40-204ENST00000427947 NUDT19A8MXV4 375 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 IRS4O14654 1257 aaPredicted RBP6.01□□□□□ -1.45
USP40-204ENST00000427947 KCNQ2O43526 872 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 NTRK1P04629 796 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 TAL1P17542 331 aaPredicted RBP6.01□□□□□ -1.45
USP40-204ENST00000427947 PAK1Q13153 545 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 TAF7LQ5H9L4 462 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 EGFLAMQ63HQ2 1017 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 WWC2Q6AWC2 1192 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 ZC3H7AQ8IWR0 971 aaKnown RBP6.01□□□□□ -1.45
USP40-204ENST00000427947 Q8N1Y9 231 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 NINJ1Q92982 152 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 SCLYQ96I15 445 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 KCNJ15Q99712 375 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 JAM3Q9BX67 310 aa6.01□□□□□ -1.45
USP40-204ENST00000427947 OR14I1A6ND48 311 aa6□□□□□ -1.45
USP40-204ENST00000427947 FAM47E-STBD1D6RA91 191 aa6□□□□□ -1.45
USP40-204ENST00000427947 ARVCFO00192 962 aa6□□□□□ -1.45
USP40-204ENST00000427947 SRGAP3O43295 1099 aa6□□□□□ -1.45
USP40-204ENST00000427947 RFPL3O75679 317 aa6□□□□□ -1.45
USP40-204ENST00000427947 MPOP05164 745 aa6□□□□□ -1.45
USP40-204ENST00000427947 DBHP09172 617 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms