RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 PCBP3P57721 371 aaKnown RBP3.48□□□□□ -1.85
VPS13A-208ENST00000423463 HEATR6Q6AI08 1181 aaKnown RBP3.48□□□□□ -1.85
VPS13A-208ENST00000423463 MRM1Q6IN84 353 aaKnown RBP3.48□□□□□ -1.85
VPS13A-208ENST00000423463 TANGO6Q9C0B7 1094 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 KLHL25Q9H0H3 589 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 PRKAG3Q9UGI9 489 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 SUGT1Q9Y2Z0 365 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 SLC12A7Q9Y666 1083 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 TECPR2O15040 1411 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 PTCH1Q13635 1447 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 SSU72P8A0A1W2PR75 194 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 DDAH1O94760 285 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 IFNGR1P15260 489 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 SMARCC1Q92922 1105 aaPredicted RBP3.48□□□□□ -1.85
VPS13A-208ENST00000423463 POGKQ9P215 609 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 TONSLQ96HA7 1378 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 DCCP43146 1447 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 CD3EP07766 207 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ITGA4P13612 1032 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ITGB5P18084 799 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 KIR3DS1Q14943 382 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 DPY19L1Q2PZI1 675 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ANKS3Q6ZW76 656 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ATG4DQ86TL0 474 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ENOX1Q8TC92 643 aaKnown RBP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 FAM168AQ92567 244 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 GMLQ99445 158 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 G6PC3Q9BUM1 346 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 SUSD2Q9UGT4 822 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ZMYM5Q9UJ78 669 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ADGRL3Q9HAR2 1447 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 XRN1Q8IZH2 1706 aaKnown RBP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 IFT172Q9UG01 1749 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 CCDC85CA6NKD9 419 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 STXBP3O00186 592 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 VAMP4O75379 141 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 HSPA1LP34931 641 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 GTF2F1P35269 517 aaKnown RBP eCLIP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 TCEAL1Q15170 157 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 LINC00116Q8NCU8 138 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 FLAD1Q8NFF5 587 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 LIN37Q96GY3 246 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 PRAM1Q96QH2 718 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 MCMBPQ9BTE3 642 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 ERVK13-1Q9NX77 482 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 WHRNQ9P202 907 aa3.47□□□□□ -1.85
VPS13A-208ENST00000423463 CGGBP1Q9UFW8 167 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-208ENST00000423463 TBX1O43435 398 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 GJB6O95452 261 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 GSTM1P09488 218 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 BMP8BP34820 402 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 GDNFP39905 211 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 NBPF8Q3BBV2 869 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 ANKRD39Q53RE8 183 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 TNNI3KQ59H18 835 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 RNF111Q6ZNA4 994 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 ZSWIM9Q86XI8 627 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 SIRT2Q8IXJ6 389 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 FAM178BQ8IXR5 827 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 SLC43A3Q8NBI5 491 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 DHX38Q92620 1227 aaKnown RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 PPP1R1BQ9UD71 204 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 GPR55Q9Y2T6 319 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 FHOD1Q9Y613 1164 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 DLC1Q96QB1 1528 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 SETD1AO15047 1707 aaKnown RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 LAMC1P11047 1609 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 ADGRB1O14514 1584 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 ASXL1Q8IXJ9 1541 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 PLEKHH1Q9ULM0 1364 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 PSPNO60542 156 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 VAV1P15498 845 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 SDHBP21912 280 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 KCNMB1Q16558 191 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 RTP2Q5QGT7 225 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 CWF19L1Q69YN2 538 aaKnown RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 CEP128Q6ZU80 1094 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 BRINP3Q76B58 766 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 SYTL4Q96C24 671 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 KIRREL1Q96J84 757 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 HHIPL1Q96JK4 782 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 KCNK12Q9HB15 430 aa3.46□□□□□ -1.86
VPS13A-208ENST00000423463 R3HCC1Q9Y3T6 440 aaKnown RBP3.46□□□□□ -1.86
VPS13A-208ENST00000423463 MST1RQ04912 1400 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF503-AS2A6NEH8 195 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF205O95201 554 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 SAFB2Q14151 953 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS13A-208ENST00000423463 PDZD8Q8NEN9 1154 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 LINC01599Q8WXQ3 324 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 MYLIPQ8WY64 445 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 MAP6Q96JE9 813 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 FCRL3Q96P31 734 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-208ENST00000423463 SLC12A9Q9BXP2 914 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 RNF32Q9H0A6 362 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 GBP3Q9H0R5 595 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 SP110Q9HB58 689 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS13A-208ENST00000423463 GPR160Q9UJ42 338 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 XIRP1Q702N8 1843 aaKnown RBP3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms