RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 PCDHA8Q9Y5H6 950 aa12.87□□□□□ -0.35
LINC00539-201ENST00000411525 PCDHA1Q9Y5I3 950 aa12.87□□□□□ -0.35
LINC00539-201ENST00000411525 RPTORQ8N122 1335 aa12.87□□□□□ -0.35
LINC00539-201ENST00000411525 ALPK3Q96L96 1907 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 PLXNB2O15031 1838 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 FLOT1O75955 427 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 USH1GQ495M9 461 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 PRPF38AQ8NAV1 312 aaKnown RBP12.86□□□□□ -0.35
LINC00539-201ENST00000411525 GPT2Q8TD30 523 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 GTF3C2Q8WUA4 911 aaPredicted RBP12.86□□□□□ -0.35
LINC00539-201ENST00000411525 PRO3102Q9H379 93 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 PPP1R9AQ9ULJ8 1098 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 RLFQ13129 1914 aa12.86□□□□□ -0.35
LINC00539-201ENST00000411525 A0A0G2JMZ2 1700 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 GOLGA6L4A6NEF3 574 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 SPTLC2O15270 562 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 MRPL12P52815 198 aaKnown RBP12.85□□□□□ -0.35
LINC00539-201ENST00000411525 SLC39A14Q15043 492 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 NONOQ15233 471 aaKnown RBP eCLIP12.85□□□□□ -0.35
LINC00539-201ENST00000411525 PTPAQ15257 358 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 TTC38Q5R3I4 469 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 CCDC174Q6PII3 467 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 SAMD1Q6SPF0 538 aaPredicted RBP12.85□□□□□ -0.35
LINC00539-201ENST00000411525 CCAR1Q8IX12 1150 aaKnown RBP12.85□□□□□ -0.35
LINC00539-201ENST00000411525 TRMT44Q8IYL2 757 aaKnown RBP12.85□□□□□ -0.35
LINC00539-201ENST00000411525 GPRC5AQ8NFJ5 357 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 SOCS4Q8WXH5 440 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 PAWRQ96IZ0 340 aaKnown RBP12.85□□□□□ -0.35
LINC00539-201ENST00000411525 PGBD1Q96JS3 809 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 NUDT12Q9BQG2 462 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 ANP32EQ9BTT0 268 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 GJD2Q9UKL4 321 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 CEP131Q9UPN4 1083 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 ABCB11O95342 1321 aa12.85□□□□□ -0.35
LINC00539-201ENST00000411525 PPP6R2O75170 966 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 BMP15O95972 392 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 ICAM1P05362 532 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 FDX1P10109 184 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 XRCC5P13010 732 aaKnown RBP12.84□□□□□ -0.35
LINC00539-201ENST00000411525 TAL1P17542 331 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-201ENST00000411525 ATP2B1P20020 1258 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 MAPK4P31152 587 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 ME1P48163 572 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 CLK2P49760 499 aaKnown RBP12.84□□□□□ -0.35
LINC00539-201ENST00000411525 UBE2SQ16763 222 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 JAKMIP3Q5VZ66 844 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 TEX2Q8IWB9 1127 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 P2RX7Q99572 595 aaKnown RBP12.84□□□□□ -0.35
LINC00539-201ENST00000411525 PSTPIP2Q9H939 334 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 SLC38A10Q9HBR0 1119 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.84□□□□□ -0.35
LINC00539-201ENST00000411525 PCDHB6Q9Y5E3 794 aa12.84□□□□□ -0.35
LINC00539-201ENST00000411525 MORC2Q9Y6X9 1032 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-201ENST00000411525 COL11A1P12107 1806 aaPredicted RBP12.83□□□□□ -0.35
LINC00539-201ENST00000411525 USP17L15C9J2P7 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L13C9JLJ4 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L11C9JVI0 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L18D6R9N7 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L22D6RA61 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L17D6RBQ6 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L19D6RCP7 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L20D6RJB6 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 WNT7AO00755 349 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 HERVK_113P62684 666 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L24Q0WX57 530 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 AP3B2Q13367 1082 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 INF2Q27J81 1249 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 TMEM260Q9NX78 707 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 PNMA2Q9UL42 364 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 CCPG1Q9ULG6 757 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 MRPL11Q9Y3B7 192 aaKnown RBP12.83□□□□□ -0.36
LINC00539-201ENST00000411525 CTDP1Q9Y5B0 961 aaPredicted RBP12.83□□□□□ -0.36
LINC00539-201ENST00000411525 ZNF536O15090 1300 aa12.83□□□□□ -0.36
LINC00539-201ENST00000411525 ZBED4O75132 1171 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 CYP2B6P20813 491 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 DSG3P32926 999 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 TPRNQ4KMQ1 711 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 MCTP2Q6DN12 878 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 CATSPERGQ6ZRH7 1159 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 NEK8Q86SG6 692 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 ATG4CQ96DT6 458 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 PCDHA7Q9UN72 937 aa12.82□□□□□ -0.36
LINC00539-201ENST00000411525 DNAH12Q6ZR08 3092 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 A0A1W2PQ27 194 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 A0A1W2PQ64 194 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 A0A1W2PQD8 194 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 PIK3CDO00329 1044 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 VWA5AO00534 786 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 MEIS2O14770 477 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 OPLAHO14841 1288 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 MARCKSP29966 332 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 BMP8BP34820 402 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 ERVK-9P63128 1117 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 ERVK-24P63145 666 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 CCNA1P78396 465 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 ORC2Q13416 577 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 COG2Q14746 738 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 ZNF174Q15697 407 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 MAP3K21Q5TCX8 1036 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 ADALQ6DHV7 355 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms