RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 NCAPHQ15003 741 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 TXNRD3Q86VQ6 643 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 HSCBQ8IWL3 235 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 FTSJ3Q8IY81 847 aaKnown RBP6.59□□□□□ -1.35
CLK1-202ENST00000409403 DZIP1LQ8IYY4 767 aaKnown RBP6.59□□□□□ -1.35
CLK1-202ENST00000409403 FBLIM1Q8WUP2 373 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 TSPYL1Q9H0U9 437 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 ZNF214Q9UL59 606 aaPredicted RBP6.59□□□□□ -1.35
CLK1-202ENST00000409403 N4BP2Q86UW6 1770 aaPredicted RBP6.59□□□□□ -1.35
CLK1-202ENST00000409403 KIAA1551Q9HCM1 1747 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 PNPLA7Q6ZV29 1317 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 UBOX5O94941 541 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 IFRD2Q12894 506 aaPredicted RBP6.58□□□□□ -1.36
CLK1-202ENST00000409403 BBS9Q3SYG4 887 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 SGO2Q562F6 1265 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 JAZF1Q86VZ6 243 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 BAHD1Q8TBE0 780 aaPredicted RBP6.58□□□□□ -1.36
CLK1-202ENST00000409403 XAGE3Q8WTP9 111 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 EZH1Q92800 747 aaPredicted RBP6.58□□□□□ -1.36
CLK1-202ENST00000409403 UTP4Q969X6 686 aaKnown RBP6.58□□□□□ -1.36
CLK1-202ENST00000409403 MEGF10Q96KG7 1140 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 MYRFLQ96LU7 910 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 SLC6A18Q96N87 628 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.58□□□□□ -1.36
CLK1-202ENST00000409403 PCDHB10Q9UN67 800 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 CASP8AP2Q9UKL3 1982 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 SBNO1A3KN83 1393 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 IGSF1Q8N6C5 1336 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 CCDC66A2RUB6 948 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 NFICP08651 508 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 BMP3P12645 472 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 SOX10P56693 466 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 SLC7A5Q01650 507 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 MAP7Q14244 749 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 CHRNA2Q15822 529 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 GNPTABQ3T906 1256 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 SLC17A8Q8NDX2 589 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 MPHOSPH9Q99550 1183 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 CHMP4BQ9H444 224 aaKnown RBP6.58□□□□□ -1.36
CLK1-202ENST00000409403 CCDC39Q9UFE4 941 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 LMO7Q8WWI1 1683 aa6.58□□□□□ -1.36
CLK1-202ENST00000409403 ROCK1Q13464 1354 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 CLTCL1P53675 1640 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 PLIN1O60240 522 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 CLEC3AO75596 197 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 FXR1P51114 621 aaKnown RBP eCLIP6.57□□□□□ -1.36
CLK1-202ENST00000409403 PMS1P54277 932 aaKnown RBP6.57□□□□□ -1.36
CLK1-202ENST00000409403 MTERF2Q49AM1 385 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 MRM1Q6IN84 353 aaKnown RBP6.57□□□□□ -1.36
CLK1-202ENST00000409403 SDE2Q6IQ49 451 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 KIAA1211LQ6NV74 962 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 TMEM192Q8IY95 271 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 ARMC10Q8N2F6 343 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 NGEFQ8N5V2 710 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 DNAJC7Q99615 494 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 PRDM11Q9NQV5 511 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 SUCOQ9UBS9 1254 aaKnown RBP6.57□□□□□ -1.36
CLK1-202ENST00000409403 MRPL42Q9Y6G3 142 aaKnown RBP6.57□□□□□ -1.36
CLK1-202ENST00000409403 LTBP1Q14766 1721 aa6.57□□□□□ -1.36
CLK1-202ENST00000409403 CNTNAP1P78357 1384 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 MAP4P27816 1152 aaKnown RBP6.56□□□□□ -1.36
CLK1-202ENST00000409403 EEPD1Q7L9B9 569 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 TEX2Q8IWB9 1127 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 FAM20CQ8IXL6 584 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 NLGN1Q8N2Q7 840 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 ST13P5Q8NFI4 369 aaPredicted RBP6.56□□□□□ -1.36
CLK1-202ENST00000409403 KLHL6Q8WZ60 621 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 LGR6Q9HBX8 967 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 TMEM51Q9NW97 253 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 ZKSCAN5Q9Y2L8 839 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 KIAA0232Q92628 1395 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 MEGF6O75095 1541 aa6.56□□□□□ -1.36
CLK1-202ENST00000409403 FAM95CA0A1B0GW59 222 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 DYNC1LI2O43237 492 aaPredicted RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 CHMP4BP1P59074 171 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 FAM193AP78312 1265 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 DNTTIP2Q5QJE6 756 aaKnown RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 LETMD1Q6P1Q0 360 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 MYRIPQ8NFW9 859 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 PPP1R13LQ8WUF5 828 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 PSMG3-AS1Q96PY0 264 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 MIPEPQ99797 713 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 MCOLN1Q9GZU1 580 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 CEP131Q9UPN4 1083 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 NRXN1Q9ULB1 1477 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 SBF1O95248 1867 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 BRCA1P38398 1863 aaKnown RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 TRPM1Q7Z4N2 1603 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 KRBA1A5PL33 1030 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 DHX15O43143 795 aaKnown RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 HSP90AB1P08238 724 aaKnown RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 SEZ6L2Q6UXD5 910 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 CREBRFQ8IUR6 639 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 TCP11L2Q8N4U5 519 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 DNAJB8Q8NHS0 232 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 SMARCC1Q92922 1105 aaPredicted RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 SNX21Q969T3 373 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 ZNF669Q96BR6 464 aaPredicted RBP6.55□□□□□ -1.36
CLK1-202ENST00000409403 GCC1Q96CN9 775 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 KCNF1Q9H3M0 494 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms