RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 TMEM63BQ5T3F8 832 aa13.28□□□□□ -0.28
SKA3-203ENST00000400018 KRI1Q8N9T8 703 aaKnown RBP13.28□□□□□ -0.28
SKA3-203ENST00000400018 CCDC12Q8WUD4 166 aaPredicted RBP13.28□□□□□ -0.28
SKA3-203ENST00000400018 RBPJLQ9UBG7 517 aa13.28□□□□□ -0.28
SKA3-203ENST00000400018 NOL7Q9UMY1 257 aaKnown RBP13.28□□□□□ -0.28
SKA3-203ENST00000400018 PDHXO00330 501 aa13.27□□□□□ -0.28
SKA3-203ENST00000400018 YEATS4O95619 227 aa13.27□□□□□ -0.28
SKA3-203ENST00000400018 PRR29P0C7W0 189 aa13.27□□□□□ -0.28
SKA3-203ENST00000400018 SAPCD2Q86UD0 394 aa13.27□□□□□ -0.28
SKA3-203ENST00000400018 DAGLBQ8NCG7 672 aa13.27□□□□□ -0.28
SKA3-203ENST00000400018 GCOM1H8Y6P7 765 aaPredicted RBP13.27□□□□□ -0.29
SKA3-203ENST00000400018 IGF2BP3O00425 579 aaKnown RBP eCLIP13.27□□□□□ -0.29
SKA3-203ENST00000400018 AOC2O75106 756 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 POLR2MP0CAP2 368 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 PPIL2Q13356 520 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 MAP3K11Q16584 847 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 ADALQ6DHV7 355 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 MRPS27Q92552 414 aaKnown RBP13.27□□□□□ -0.29
SKA3-203ENST00000400018 HAS1Q92839 578 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 WDR11Q9BZH6 1224 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 DDX25Q9UHL0 483 aaKnown RBP13.27□□□□□ -0.29
SKA3-203ENST00000400018 CPA4Q9UI42 421 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 ASTN1O14525 1302 aa13.27□□□□□ -0.29
SKA3-203ENST00000400018 NEMFO60524 1076 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 CNMDO75829 334 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ZNF202O95125 648 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ARP10275 920 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 PTPREP23469 700 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 PNOCQ13519 176 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 L1TD1Q5T7N2 865 aaKnown RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 KRT25Q7Z3Z0 450 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ENGASEQ8NFI3 743 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 KCNG4Q8TDN1 519 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 SMCR8Q8TEV9 937 aaPredicted RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 A1CFQ9NQ94 594 aaKnown RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 SERTAD1Q9UHV2 236 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 YY1P25490 414 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ZNF76P36508 570 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ATP2C1P98194 919 aaPredicted RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 ECM1Q16610 540 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 SPRYD7Q5W111 196 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ZNF784Q8NCA9 323 aaPredicted RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 SYTL5Q8TDW5 730 aaPredicted RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 BLZF1Q9H2G9 400 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 PDCL3Q9H2J4 239 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ELP1O95163 1332 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ZBTB39O15060 712 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 MARCH6O60337 910 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 ERCC3P19447 782 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 SH3D19Q5HYK7 790 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 FMR1NBQ8N0W7 255 aaPredicted RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 C12orf42Q96LP6 360 aa13.26□□□□□ -0.29
SKA3-203ENST00000400018 MOV10L1Q9BXT6 1211 aaKnown RBP13.26□□□□□ -0.29
SKA3-203ENST00000400018 DOCK3Q8IZD9 2030 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 ESYT2A0FGR8 921 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 MEIS1O00470 390 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 CYP4A11Q02928 519 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 RAD51AP2Q09MP3 1159 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 SNAPC2Q13487 334 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 CALCRLQ16602 461 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 RNF207Q6ZRF8 634 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 TTC12Q9H892 705 aaPredicted RBP13.25□□□□□ -0.29
SKA3-203ENST00000400018 KCNH3Q9ULD8 1083 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 AGTPBP1Q9UPW5 1226 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 KCNH4Q9UQ05 1017 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 PARP14Q460N5 1801 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 MRPS9P82933 396 aaKnown RBP13.25□□□□□ -0.29
SKA3-203ENST00000400018 LBX2Q6XYB7 198 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 CCDC73Q6ZRK6 1079 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 RASSF8Q8NHQ8 419 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 LENG9Q96B70 501 aa13.25□□□□□ -0.29
SKA3-203ENST00000400018 MRPL11Q9Y3B7 192 aaKnown RBP13.25□□□□□ -0.29
SKA3-203ENST00000400018 SRPRBQ9Y5M8 271 aaKnown RBP13.25□□□□□ -0.29
SKA3-203ENST00000400018 TESPA1A2RU30 521 aaPredicted RBP13.24□□□□□ -0.29
SKA3-203ENST00000400018 ITGB5P18084 799 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 SYKP43405 635 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 ANKRD35Q8N283 1001 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 RBM46Q8TBY0 533 aaKnown RBP13.24□□□□□ -0.29
SKA3-203ENST00000400018 PPP1R13LQ8WUF5 828 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 RMDN3Q96TC7 470 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 SDF4Q9BRK5 362 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 SPATC1LQ9H0A9 340 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 TNMDQ9H2S6 317 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 ATP9AO75110 1047 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 XRCC6P12956 609 aaKnown RBP eCLIP13.24□□□□□ -0.29
SKA3-203ENST00000400018 RESP18Q5W5W9 173 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 KCNK18Q7Z418 384 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 RASAL3Q86YV0 1011 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 NUP62CLQ9H1M0 184 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 BMP2KQ9NSY1 1161 aaPredicted RBP13.24□□□□□ -0.29
SKA3-203ENST00000400018 HOXC10Q9NYD6 342 aa13.24□□□□□ -0.29
SKA3-203ENST00000400018 OR52Z1P0C646 297 aa13.23□□□□□ -0.29
SKA3-203ENST00000400018 CACNB1Q02641 598 aaPredicted RBP13.23□□□□□ -0.29
SKA3-203ENST00000400018 SMYD4Q8IYR2 804 aaPredicted RBP13.23□□□□□ -0.29
SKA3-203ENST00000400018 TEX13BQ9BXU2 312 aa13.23□□□□□ -0.29
SKA3-203ENST00000400018 RBSNQ9H1K0 784 aa13.23□□□□□ -0.29
SKA3-203ENST00000400018 LAMA3Q16787 3333 aa13.23□□□□□ -0.29
SKA3-203ENST00000400018 TMEM150BA6NC51 233 aa13.23□□□□□ -0.29
SKA3-203ENST00000400018 MSH4O15457 936 aa13.23□□□□□ -0.29
SKA3-203ENST00000400018 PPP6R2O75170 966 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms