RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SALL1Q9NSC2 1324 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 LRRIQ4A6NIV6 560 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 AOC2O75106 756 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 CDR1P51861 262 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 HERVK_113P62684 666 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 ARHGAP4P98171 946 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 GABPB1Q06547 395 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 MTMR1Q13613 665 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 RGMBQ6NW40 437 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 ASCC2Q9H1I8 757 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 KCNF1Q9H3M0 494 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 CASP1P29466 404 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 ZNF165P49910 485 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 ATN1P54259 1190 aaPredicted RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 LPAR1Q92633 364 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 EPSTI1Q96J88 318 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 TRIM6Q9C030 488 aaPredicted RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 MYH14Q7Z406 1995 aaKnown RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 TYRO3Q06418 890 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 PFKFB3Q16875 520 aaPredicted RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 C15orf52Q6ZUT6 534 aaKnown RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 NSUN6Q8TEA1 469 aaKnown RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 VPS33BQ9H267 617 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 SERTAD1Q9UHV2 236 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 TMEM88BA6NKF7 163 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 STXBP2Q15833 593 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 HAUS3Q68CZ6 603 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 BANK1Q8NDB2 785 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 KLRG1Q96E93 195 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 TEKT3Q9BXF9 490 aa11.5□□□□□ -0.57
COL6A3-205ENST00000392004 PRDM5Q9NQX1 630 aaPredicted RBP11.5□□□□□ -0.57
COL6A3-205ENST00000392004 PHACTR2O75167 634 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 TXNP10599 105 aaKnown RBP11.49□□□□□ -0.57
COL6A3-205ENST00000392004 BBXQ8WY36 941 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-205ENST00000392004 TAAR1Q96RJ0 339 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 CSRNP2Q9H175 543 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 AKT3Q9Y243 479 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 LRRC37A3O60309 1634 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 CTIFO43310 598 aaKnown RBP11.49□□□□□ -0.57
COL6A3-205ENST00000392004 FOSP01100 380 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-205ENST00000392004 PSMC4P43686 418 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 CNTN2Q02246 1040 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 SYCP1Q15431 976 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 NOM1Q5C9Z4 860 aaKnown RBP11.49□□□□□ -0.57
COL6A3-205ENST00000392004 TREML2Q5T2D2 321 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 CYFIP1Q7L576 1253 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 LUZP1Q86V48 1076 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 SGMS1Q86VZ5 419 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 CAPNS2Q96L46 248 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 TMX2Q9Y320 296 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 ZNF202O95125 648 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 SRGAP2CP0DJJ0 459 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 ARID5AQ03989 594 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 SREBF2Q12772 1141 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 CEP170P1Q96L14 293 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 TSG101Q99816 390 aa11.49□□□□□ -0.57
COL6A3-205ENST00000392004 POLGP54098 1239 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 OSTNP61366 133 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 GPBP1Q86WP2 473 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 SYMPKQ92797 1274 aaKnown RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 PCDHA7Q9UN72 937 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 USP2O75604 605 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 GCNT3O95395 438 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 CCND2P30279 289 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 NCBP1Q09161 790 aaKnown RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 ANO6Q4KMQ2 910 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 DCAF17Q5H9S7 520 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 PRAMEF19Q5SWL8 479 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 POTEDQ86YR6 584 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 TRMT44Q8IYL2 757 aaKnown RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 NLRP4Q96MN2 994 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 DDX19AQ9NUU7 478 aaKnown RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 ANO10Q9NW15 660 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 INO80B-WBP1J3KQ70 363 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 CYP2C19P33261 490 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 TMEM62Q0P6H9 643 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 PNOCQ13519 176 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 SPOUT1Q5T280 376 aaKnown RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 INO80BQ9C086 356 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-205ENST00000392004 NBPF3Q9H094 633 aa11.48□□□□□ -0.57
COL6A3-205ENST00000392004 NR3C2P08235 984 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 LRRC41Q15345 812 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 KRT222Q8N1A0 295 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 CCDC102AQ96A19 550 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 MRPL44Q9H9J2 332 aaKnown RBP11.47□□□□□ -0.57
COL6A3-205ENST00000392004 BARHL2Q9NY43 387 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 RGL1Q9NZL6 768 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 FBXO40Q9UH90 709 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 DACH1Q9UI36 760 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 BTAF1O14981 1849 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 KIF28PB7ZC32 967 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 COL18A1P39060 1754 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 DNA2P51530 1060 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 SWSAP1Q6NVH7 229 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 SMYD4Q8IYR2 804 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-205ENST00000392004 FUCA2Q9BTY2 467 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 MAD2L2Q9UI95 211 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 NR1I2O75469 434 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 GNASQ5JWF2 1037 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 FBXO16Q8IX29 292 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms