RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 GUCY2FP51841 1108 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 GUCY1A3Q02108 690 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 FAM98CQ17RN3 349 aaKnown RBP20.5■□□□□ 0.87
CCDC3-201ENST00000378825 CABP7Q86V35 215 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 DYNLL2Q96FJ2 89 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 ERGIC2Q96RQ1 377 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 PACSIN2Q9UNF0 486 aaPredicted RBP20.5■□□□□ 0.87
CCDC3-201ENST00000378825 SIK3Q9Y2K2 1263 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 ZNF804BA4D1E1 1349 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 LOC102724159A0A0B4J2E5 919 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 HNRNPH1P31943 449 aaKnown RBP20.49■□□□□ 0.87
CCDC3-201ENST00000378825 SLC1A4P43007 532 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 PWP2Q15269 919 aaKnown RBP20.49■□□□□ 0.87
CCDC3-201ENST00000378825 CCDC70Q6NSX1 233 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 IFT81Q8WYA0 676 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 USP17L3A6NCW0 530 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 USP17L4A6NCW7 530 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 MYO1FO00160 1098 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 PRDX5P30044 214 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 MECOMQ03112 1051 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 USP17L1Q7RTZ2 530 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 SLC51AQ86UW1 340 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 ZSCAN29Q8IWY8 852 aaPredicted RBP20.49■□□□□ 0.87
CCDC3-201ENST00000378825 CCDC43Q96MW1 224 aaKnown RBP20.49■□□□□ 0.87
CCDC3-201ENST00000378825 TFCP2L1Q9NZI6 479 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 MINPP1Q9UNW1 487 aa20.49■□□□□ 0.87
CCDC3-201ENST00000378825 NDUFAB1O14561 156 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 USO1O60763 962 aaKnown RBP20.48■□□□□ 0.87
CCDC3-201ENST00000378825 TECP42680 631 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 LETM2Q2VYF4 491 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 IQCEQ6IPM2 695 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 C8orf74Q6P047 294 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 RETREG2Q8NC44 543 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 RNPC3Q96LT9 517 aaKnown RBP20.48■□□□□ 0.87
CCDC3-201ENST00000378825 CDCA7Q9BWT1 371 aaPredicted RBP20.48■□□□□ 0.87
CCDC3-201ENST00000378825 CCSER1Q9C0I3 900 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 ZNF652Q9Y2D9 606 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 SHTN1A0MZ66 631 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 ZNF233A6NK53 670 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 CALML3P27482 149 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 EPHB4P54760 987 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 NNTQ13423 1086 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 TBC1D9BQ66K14 1250 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 DYMQ7RTS9 669 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 FAM84BQ96KN1 310 aaPredicted RBP20.48■□□□□ 0.87
CCDC3-201ENST00000378825 SRP68Q9UHB9 627 aaKnown RBP20.48■□□□□ 0.87
CCDC3-201ENST00000378825 HYOU1Q9Y4L1 999 aa20.48■□□□□ 0.87
CCDC3-201ENST00000378825 GOLGA8KD6RF30 607 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 INPP5BP32019 993 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 MAGEA1P43355 309 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 NAP1L1P55209 391 aaKnown RBP20.47■□□□□ 0.87
CCDC3-201ENST00000378825 TFAP4Q01664 338 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 GPATCH11Q8N954 259 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 PROCA1Q8NCQ7 364 aaPredicted RBP20.47■□□□□ 0.87
CCDC3-201ENST00000378825 PNMA1Q8ND90 353 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 NSUN4Q96CB9 384 aaKnown RBP20.47■□□□□ 0.87
CCDC3-201ENST00000378825 KANSL2Q9H9L4 492 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 FTCDO95954 541 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 SEC24CP53992 1094 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 KLHDC7AQ5VTJ3 777 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 RUFY1Q96T51 708 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 NDST4Q9H3R1 872 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 NLRC4Q9NPP4 1024 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 SPATA31A5Q5VU36 1347 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 SPATA31A7Q8IWB4 1347 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 ORC4O43929 436 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 HSF2BPO75031 334 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 SLC44A5Q8NCS7 719 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 TSGA10Q9BZW7 698 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 EPB41L5Q9HCM4 733 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 CAPN7Q9Y6W3 813 aa20.47■□□□□ 0.87
CCDC3-201ENST00000378825 A0A1B0GUL6 1792 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 DLEC1Q9Y238 1755 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 GUCY2DQ02846 1103 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 LRRC41Q15345 812 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 ENOX2Q16206 610 aaKnown RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 PTPROQ16827 1216 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 CAVIN4Q5BKX8 364 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 FAM182BQ5T319 152 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 ZNF572Q7Z3I7 529 aaPredicted RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 MMTAG2Q9BU76 263 aaKnown RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 THRAP3Q9Y2W1 955 aaKnown RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 CCNT1O60563 726 aaKnown RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 VWA3BQ502W6 1294 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 SUGP1Q8IWZ8 645 aaKnown RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 NOC3LQ8WTT2 800 aaKnown RBP20.46■□□□□ 0.87
CCDC3-201ENST00000378825 PIK3R5Q8WYR1 880 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 MCM9Q9NXL9 1143 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 MAD2L2Q9UI95 211 aa20.46■□□□□ 0.87
CCDC3-201ENST00000378825 A0A1W2PQJ5 194 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 OPA1O60313 960 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 CDK17Q00537 523 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 MCTP2Q6DN12 878 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 DNAAF5Q86Y56 855 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 BAP1Q92560 729 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 FAM107BQ9H098 131 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 PHLPP1O60346 1717 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 BICDL2A1A5D9 508 aa20.45■□□□□ 0.86
CCDC3-201ENST00000378825 TCP1P17987 556 aaKnown RBP20.45■□□□□ 0.86
CCDC3-201ENST00000378825 BSDC1Q9NW68 430 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms