RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PRR12Q9ULL5 1215 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 SLC45A1Q9Y2W3 748 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 PALM3A6NDB9 673 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 BECN2A8MW95 431 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 VWA5AO00534 786 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 FOXN1O15353 648 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 HSPA1AP0DMV8 641 aaKnown RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 HSPA1BP0DMV9 641 aaKnown RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 PFKFB1P16118 471 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 CAP1Q01518 475 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 ZRSR1Q15695 479 aaKnown RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 NOSTRINQ8IVI9 506 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 PRPF38AQ8NAV1 312 aaKnown RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 CTCFLQ8NI51 663 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 HOXC10Q9NYD6 342 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 FAM53CQ9NYF3 392 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 MYH6P13533 1939 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 CENPFP49454 3210 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 ZSWIM8A7E2V4 1837 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 ADGRA2Q96PE1 1338 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 FAM237AA0A1B0GTK4 181 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 CYTH3O43739 400 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 CUTAO60888 179 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 CNMDO75829 334 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 TMEM132BQ14DG7 1078 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 ASPRV1Q53RT3 343 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 GPATCH4Q5T3I0 446 aaKnown RBP16.18■□□□□ 0.18
HMGA1-203ENST00000374116 TMTC3Q6ZXV5 915 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 DRC7Q8IY82 874 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 ADGRF4Q8IZF3 695 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 BPIFA3Q9BQP9 254 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 PYCARDQ9ULZ3 195 aa16.18■□□□□ 0.18
HMGA1-203ENST00000374116 BTBD18B2RXH4 712 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 MARCKSP29966 332 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 SYDE2Q5VT97 1194 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 HOMER1Q86YM7 354 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 DHX40Q8IX18 779 aaKnown RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 SRBD1Q8N5C6 995 aaKnown RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 CHURC1Q8WUH1 139 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 ARHGAP39Q9C0H5 1083 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 RAVER2Q9HCJ3 691 aaKnown RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 ZCCHC17Q9NP64 241 aaKnown RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 HPSEQ9Y251 543 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 TOB1P50616 345 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 TERF2Q15554 542 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 C17orf99Q6UX52 265 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 LBX2Q6XYB7 198 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 DIS3L2Q8IYB7 885 aaKnown RBP16.17■□□□□ 0.18
HMGA1-203ENST00000374116 MRFAP1L1Q96HT8 127 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 AGBL1Q96MI9 1066 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 KCNJ14Q9UNX9 436 aa16.17■□□□□ 0.18
HMGA1-203ENST00000374116 GPR25O00155 361 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 TULP2O00295 520 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 BCRP11274 1271 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 SYKP43405 635 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 RILPL1Q5EBL4 403 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 RESP18Q5W5W9 173 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 BTNL9Q6UXG8 535 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 FAM160B2Q86V87 743 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 PORCNQ9H237 461 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 JMJD4Q9H9V9 463 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 ADAMTS5Q9UNA0 930 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 RIPK3Q9Y572 518 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 PAXBP1Q9Y5B6 917 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 CASP8AP2Q9UKL3 1982 aa16.16■□□□□ 0.18
HMGA1-203ENST00000374116 CNTNAP5Q8WYK1 1306 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 XBP1P17861 261 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 PTGS1P23219 599 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 CTGFP29279 349 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 NLRP12P59046 1061 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 ERVK-9P63128 1117 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 ERVK-24P63145 666 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 IRX5P78411 483 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 AKAP17AQ02040 695 aaKnown RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 WDR78Q5VTH9 848 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 SHC4Q6S5L8 630 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 REPS2Q8NFH8 660 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 ZNF296Q8WUU4 475 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 PIGSQ96S52 555 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 PHF20Q9BVI0 1012 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 TSPYL1Q9H0U9 437 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 SLC38A10Q9HBR0 1119 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 HOMER2Q9NSB8 354 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 CTDP1Q9Y5B0 961 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 CDK11BP21127 795 aaKnown RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 KIF5BP33176 963 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 LBX1P52954 281 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 USH1GQ495M9 461 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 CCDC186Q7Z3E2 898 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 KRI1Q8N9T8 703 aaKnown RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 KIF18AQ8NI77 898 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 EFCC1Q9HA90 598 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 SAGE1Q9NXZ1 904 aa16.15■□□□□ 0.18
HMGA1-203ENST00000374116 ZNF214Q9UL59 606 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 V9GY48 417 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-203ENST00000374116 ZNF536O15090 1300 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.14■□□□□ 0.17
HMGA1-203ENST00000374116 GCLCP48506 637 aaPredicted RBP16.14■□□□□ 0.17
HMGA1-203ENST00000374116 NPY5RQ15761 445 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 CDC37Q16543 378 aaPredicted RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms