RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SLC44A5Q8NCS7 719 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 ARL8AQ96BM9 186 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 SH3GL2Q99962 352 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 MMTAG2Q9BU76 263 aaKnown RBP18.19■□□□□ 0.5
SDC4-201ENST00000372733 NDST4Q9H3R1 872 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 LOC102724428A0A0B4J2F2 783 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 SIK1P57059 783 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 ITIH3Q06033 890 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 RRAGAQ7L523 313 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 AK8Q96MA6 479 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 ALS2CR12Q96Q35 445 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 STIM2Q9P246 746 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 MYH10P35580 1976 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 TCP1P17987 556 aaKnown RBP18.19■□□□□ 0.5
SDC4-201ENST00000372733 EPHB4P54760 987 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 TTMPQ5BVD1 217 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 ICE2Q659A1 982 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 CNNM4Q6P4Q7 775 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 BCAS4Q8TDM0 211 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 RBM12Q9NTZ6 932 aaKnown RBP18.19■□□□□ 0.5
SDC4-201ENST00000372733 STX8Q9UNK0 236 aa18.19■□□□□ 0.5
SDC4-201ENST00000372733 GOLGA8KD6RF30 607 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 EIF3HO15372 352 aaKnown RBP eCLIP18.18■□□□□ 0.5
SDC4-201ENST00000372733 GNAQP50148 359 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 NAPAP54920 295 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 TMC4Q7Z404 712 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 MICALL1Q8N3F8 863 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 MTMR8Q96EF0 704 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 BUB1O43683 1085 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 MAGEA1P43355 309 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 LIG3P49916 1009 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 SF3B3Q15393 1217 aaKnown RBP18.18■□□□□ 0.5
SDC4-201ENST00000372733 C12orf60Q5U649 245 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 CENPPQ6IPU0 288 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 GALNT17Q6IS24 598 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 MS4A14Q96JA4 679 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 MKNK2Q9HBH9 465 aa18.18■□□□□ 0.5
SDC4-201ENST00000372733 LCA5LO95447 670 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 CPP00450 1065 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 PRLRP16471 622 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 HIBADHP31937 336 aaKnown RBP18.17■□□□□ 0.5
SDC4-201ENST00000372733 SLC1A4P43007 532 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 GFPT1Q06210 699 aaPredicted RBP18.17■□□□□ 0.5
SDC4-201ENST00000372733 NONOQ15233 471 aaKnown RBP eCLIP18.17■□□□□ 0.5
SDC4-201ENST00000372733 C8orf74Q6P047 294 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 BICDL1Q6ZP65 573 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 DZIP1Q86YF9 867 aaKnown RBP18.17■□□□□ 0.5
SDC4-201ENST00000372733 SH2D3CQ8N5H7 860 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 TLR10Q9BXR5 811 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 POLD4Q9HCU8 107 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 FAM169AQ9Y6X4 670 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 A0A087WUV0 522 aaPredicted RBP18.17■□□□□ 0.5
SDC4-201ENST00000372733 TSPY3P0CV98 308 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 TSPY8P0CW00 308 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 DNA2P51530 1060 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 MAN2A1Q16706 1144 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 DYMQ7RTS9 669 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 POTEDQ86YR6 584 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 CERS3Q8IU89 383 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 CCDC155Q8N6L0 562 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 BAP1Q92560 729 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 RUBCNQ92622 972 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 RUFY1Q96T51 708 aa18.17■□□□□ 0.5
SDC4-201ENST00000372733 MYMKA6NI61 221 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 EBAG9O00559 213 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 PPP1R2P41236 205 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 RASSF7Q02833 373 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 EMBQ6PCB8 327 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 KRT25Q7Z3Z0 450 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 ANKS1AQ92625 1134 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 TMEM47Q9BQJ4 181 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 ZSCAN5CA6NGD5 496 aaPredicted RBP18.16■□□□□ 0.5
SDC4-201ENST00000372733 OPA1O60313 960 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 AMPD3Q01432 767 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 PDCLQ13371 301 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 GBP6Q6ZN66 633 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 TXNRD3Q86VQ6 643 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 IQCDQ96DY2 449 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 ZMYND12Q9H0C1 365 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 ZNF652Q9Y2D9 606 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 SAMM50Q9Y512 469 aa18.16■□□□□ 0.5
SDC4-201ENST00000372733 ESYT3A0FGR9 886 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 PALM3A6NDB9 673 aaPredicted RBP18.15■□□□□ 0.5
SDC4-201ENST00000372733 KLRF2D3W0D1 207 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 HSF2BPO75031 334 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 PAFAH1B1P43034 410 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 NEK8Q86SG6 692 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 GLIS3Q8NEA6 775 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 SH3RF3Q8TEJ3 882 aaPredicted RBP18.15■□□□□ 0.5
SDC4-201ENST00000372733 CALML4Q96GE6 196 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 ZIM3Q96PE6 472 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 BLOC1S4Q9NUP1 217 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 SHTN1A0MZ66 631 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 TXKP42681 527 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 GTF2A1P52655 376 aaPredicted RBP18.15■□□□□ 0.5
SDC4-201ENST00000372733 GRB10Q13322 594 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 TDRD12Q587J7 1177 aaKnown RBP18.15■□□□□ 0.5
SDC4-201ENST00000372733 KLHDC7AQ5VTJ3 777 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 KCTD16Q68DU8 428 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 PDXDC1Q6P996 788 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms