RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 ACSL3O95573 720 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 CHN1P15882 459 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 RPS6KA3P51812 740 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 GLE1Q53GS7 698 aaKnown RBP12.87□□□□□ -0.35
PTPN1-201ENST00000371621 EZH1Q92800 747 aaPredicted RBP12.87□□□□□ -0.35
PTPN1-201ENST00000371621 TTC1Q99614 292 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 A0A1B0GTH6 734 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 SASH1O94885 1247 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 MKRN4PQ13434 485 aaPredicted RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 TTMPQ5BVD1 217 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 RESP18Q5W5W9 173 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 LDHAL6AQ6ZMR3 332 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 PRPF31Q8WWY3 499 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 TBC1D5Q92609 795 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 CNOT6LQ96LI5 555 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 PYM1Q9BRP8 204 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 SLC39A2Q9NP94 309 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 ADD3Q9UEY8 706 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 LEMD3Q9Y2U8 911 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 MAP3K7O43318 606 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 RPN1P04843 607 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 SCNN1BP51168 640 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 FYB2Q5VWT5 728 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 STOX1Q6ZVD7 989 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 NELFCDQ8IXH7 590 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 MTRQ99707 1265 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 AZI2Q9H6S1 392 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 CNOT10Q9H9A5 744 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 AMACRQ9UHK6 382 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 SNX24Q9Y343 169 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 TTC36A6NLP5 189 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 FAM153BP0C7A2 387 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 ATP5JP18859 108 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 RFC5P40937 340 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 PLCB3Q01970 1234 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 DDR1Q08345 913 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 FAM153CQ494X1 144 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 IFIT1BQ5T764 474 aaKnown RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 CCDC84Q86UT8 332 aaPredicted RBP12.86□□□□□ -0.35
PTPN1-201ENST00000371621 MB21D1Q8N884 522 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 FAM133AQ8N9E0 248 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 DNAJC9Q8WXX5 260 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 RAB17Q9H0T7 212 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 FAM153AQ9UHL3 310 aa12.86□□□□□ -0.35
PTPN1-201ENST00000371621 TCP11X1B4DZS4 312 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 RASGRF2O14827 1237 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 GRIN1Q05586 938 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 GFPT1Q06210 699 aaPredicted RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 BIRC3Q13489 604 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 SDCCAG8Q86SQ7 713 aaPredicted RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 KLHL23Q8NBE8 558 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PAGE5Q96GU1 130 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ZMAT2Q96NC0 199 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PUS7Q96PZ0 661 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PITPNM3Q9BZ71 974 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 LGR6Q9HBX8 967 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 MAP3K5Q99683 1374 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 DEXIO95424 95 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 AARSP49588 968 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ELF3P78545 371 aaPredicted RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ZBED6P86452 979 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 IFIT5Q13325 482 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ANKRD20A2Q5SQ80 823 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ANKRD20A1Q5TYW2 823 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 KDM7AQ6ZMT4 941 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 TRAPPC11Q7Z392 1133 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ADAM33Q9BZ11 813 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PRM3Q9NNZ6 103 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 FGFR1OP2Q9NVK5 253 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 STOML1Q9UBI4 398 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 LZTS1Q9Y250 596 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 BZW2Q9Y6E2 419 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 IKBKGQ9Y6K9 419 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 SUPT3HO75486 399 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 CTDNEP1O95476 244 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 SERPINB3P29508 390 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 MRPS35P82673 323 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 GRAMD4Q6IC98 578 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.85□□□□□ -0.358e-7■■■■■ 167
PTPN1-201ENST00000371621 METTL5Q9NRN9 209 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 CTTNBP2NLQ9P2B4 639 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 E9PCH4 1651 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 A0A0G2JLW4 131 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 ANO9A1A5B4 782 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 UBOX5O94941 541 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 CABP4P57796 275 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PLCB4Q15147 1175 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 PPP4R3AQ6IN85 833 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 HELBQ8NG08 1087 aaPredicted RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 NEK9Q8TD19 979 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 MAIP1Q8WWC4 291 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 RPGRQ92834 1020 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 XPO6Q96QU8 1125 aaKnown RBP12.85□□□□□ -0.35
PTPN1-201ENST00000371621 GOLPH3Q9H4A6 298 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 TUBE1Q9UJT0 475 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 DAAM1Q9Y4D1 1078 aa12.85□□□□□ -0.35
PTPN1-201ENST00000371621 CLTCL1P53675 1640 aa12.84□□□□□ -0.35
PTPN1-201ENST00000371621 TRPM2O94759 1503 aa12.84□□□□□ -0.35
PTPN1-201ENST00000371621 ATP4AP20648 1035 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms