RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 CKAP2LQ8IYA6 745 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 MBOAT7Q96N66 472 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 TEX13BQ9BXU2 312 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 RNF146Q9NTX7 359 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 MAP3K20Q9NYL2 800 aaKnown RBP21.15■□□□□ 0.98
CLN3-204ENST00000357857 FSD2A1L4K1 749 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 CYP3A4P08684 503 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 RIPK3Q9Y572 518 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 POLR2DO15514 142 aaKnown RBP21.14■□□□□ 0.97
CLN3-204ENST00000357857 ITGBL1O95965 494 aaPredicted RBP21.14■□□□□ 0.97
CLN3-204ENST00000357857 PABPC4Q13310 644 aaKnown RBP eCLIP21.14■□□□□ 0.973e-6■■■■□ 26.6
CLN3-204ENST00000357857 TKFCQ3LXA3 575 aa21.14■□□□□ 0.97
CLN3-204ENST00000357857 MB21D1Q8N884 522 aa21.14■□□□□ 0.97
CLN3-204ENST00000357857 TSPY26PQ9H489 355 aa21.14■□□□□ 0.97
CLN3-204ENST00000357857 CIITAP33076 1130 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 TXLNAP40222 546 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 STAT3P40763 770 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 PLS1Q14651 629 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 LONRF3Q496Y0 759 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 LBX2Q6XYB7 198 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 KRBA2Q6ZNG9 492 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 AK8Q96MA6 479 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 PANK2Q9BZ23 570 aa21.13■□□□□ 0.97
CLN3-204ENST00000357857 ASCC2Q9H1I8 757 aaPredicted RBP21.13■□□□□ 0.97
CLN3-204ENST00000357857 TXKP42681 527 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 TMEM266Q2M3C6 531 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 Q4G0T1 1027 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 PDILTQ8N807 584 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 CNNM3Q8NE01 707 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 FUCA2Q9BTY2 467 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 MARCH6O60337 910 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 OSBPP22059 807 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 ZNF76P36508 570 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 TECP42680 631 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 FXR2P51116 673 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-204ENST00000357857 CST9Q5W186 159 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 GPAT2Q6NUI2 795 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 RNF207Q6ZRF8 634 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 SYTL5Q8TDW5 730 aaPredicted RBP21.12■□□□□ 0.97
CLN3-204ENST00000357857 PYM1Q9BRP8 204 aaKnown RBP21.12■□□□□ 0.97
CLN3-204ENST00000357857 COL20A1Q9P218 1284 aa21.12■□□□□ 0.97
CLN3-204ENST00000357857 A0A087X0B3 334 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 CCDC192P0DO97 292 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 HERVK_113P62684 666 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 RPS6P62753 249 aaKnown RBP21.11■□□□□ 0.97
CLN3-204ENST00000357857 PRR16Q569H4 304 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 NSMFQ6X4W1 530 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 RPTORQ8N122 1335 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 HAS1Q92839 578 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 KCNMB3Q9NPA1 279 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 SERTAD1Q9UHV2 236 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 RABGAP1Q9Y3P9 1069 aa21.11■□□□□ 0.97
CLN3-204ENST00000357857 FAM86B1E9PN63 330 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 FAM86B2P0C5J1 330 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 UBA7P41226 1012 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 GTF2A2P52657 109 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 POTEEQ6S8J3 1075 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 SASS6Q6UVJ0 657 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 SLC30A10Q6XR72 485 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 ELOA2Q8IYF1 753 aaPredicted RBP21.1■□□□□ 0.97
CLN3-204ENST00000357857 IGSF22Q8N9C0 903 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 DHX58Q96C10 678 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 RAB34Q9BZG1 259 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 CCSER1Q9C0I3 900 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 ACAD9Q9H845 621 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 BTBD7Q9P203 1132 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 USP25Q9UHP3 1055 aa21.1■□□□□ 0.97
CLN3-204ENST00000357857 PP2D1A8MPX8 630 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 ACTN4O43707 911 aaKnown RBP21.09■□□□□ 0.97
CLN3-204ENST00000357857 CETPP11597 493 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 CDC25AP30304 524 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 UBXN2AP68543 259 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 LENG9Q96B70 501 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 MAF1Q9H063 256 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 TTC12Q9H892 705 aaPredicted RBP21.09■□□□□ 0.97
CLN3-204ENST00000357857 HOOK1Q9UJC3 728 aaKnown RBP21.09■□□□□ 0.97
CLN3-204ENST00000357857 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.09■□□□□ 0.97
CLN3-204ENST00000357857 TBX3O15119 743 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 TYRO3Q06418 890 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 KANK3Q6NY19 840 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 SLFN12Q8IYM2 578 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 CHST13Q8NET6 341 aa21.09■□□□□ 0.97
CLN3-204ENST00000357857 FRMPD4Q14CM0 1322 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 MKRN3Q13064 507 aaKnown RBP21.08■□□□□ 0.97
CLN3-204ENST00000357857 BAATQ14032 418 aaPredicted RBP21.08■□□□□ 0.97
CLN3-204ENST00000357857 PDIA5Q14554 519 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 SPRYD7Q5W111 196 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 CABP7Q86V35 215 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 RIOX2Q8IUF8 465 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 CEP57L1Q8IYX8 460 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 IQUBQ8NA54 791 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 ETNPPLQ8TBG4 499 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 CCDC34Q96HJ3 373 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 MS4A4AQ96JQ5 239 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 TAAR1Q96RJ0 339 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 PAGR1Q9BTK6 254 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 KIAA1468Q9P260 1216 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 PCDHA12Q9UN75 941 aa21.08■□□□□ 0.97
CLN3-204ENST00000357857 IGLV3-22A0A075B6J6 115 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 SLFN14P0C7P3 912 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms