RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 USP6P35125 1406 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 HSP90AA5PQ58FG0 334 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 GALNT17Q6IS24 598 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 ARHGEF18Q6ZSZ5 1173 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 TAB3Q8N5C8 712 aaPredicted RBP21.3■■□□□ 1
CCDC88B-202ENST00000356786 KIF11P52732 1056 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 EYA3Q99504 573 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 PCDHA13Q9Y5I0 950 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 FKBP3Q00688 224 aaKnown RBP21.3■■□□□ 1
CCDC88B-202ENST00000356786 LLGL1Q15334 1064 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 NOP53Q9NZM5 478 aaKnown RBP21.3■■□□□ 1
CCDC88B-202ENST00000356786 PCDHB6Q9Y5E3 794 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 SRPRBQ9Y5M8 271 aaKnown RBP21.3■■□□□ 1
CCDC88B-202ENST00000356786 ABCA9Q8IUA7 1624 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 UFL1O94874 794 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 SKIP12755 728 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 RCN2Q14257 317 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 CYP4F22Q6NT55 531 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 GIPC1O14908 333 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 PROSER3Q2NL68 480 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 FMO2Q99518 471 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 ADORA1P30542 326 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 TRIM6Q9C030 488 aaPredicted RBP21.29■■□□□ 1
CCDC88B-202ENST00000356786 RASGRF2O14827 1237 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 DDAH1O94760 285 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 IFNAR1P17181 557 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 NR2F2P24468 414 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 LRRC41Q15345 812 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 TTLL7Q6ZT98 887 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 RASGRP4Q8TDF6 673 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 GJB4Q9NTQ9 266 aa21.29■■□□□ 1
CCDC88B-202ENST00000356786 FAM178BQ8IXR5 827 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 ZSCAN20P17040 1043 aaPredicted RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 LMNB1P20700 586 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 LARP4BQ92615 738 aaKnown RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 ELAC2Q9BQ52 826 aaKnown RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 PUS3Q9BZE2 481 aaKnown RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 SLC24A3Q9HC58 644 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 TXLNGQ9NUQ3 528 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 RTCBQ9Y3I0 505 aaKnown RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 CCNE1P24864 410 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 ARHGAP4P98171 946 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 RNASELQ05823 741 aaKnown RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 ACTN3Q08043 901 aaPredicted RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 PRR16Q569H4 304 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 PAGE5Q96GU1 130 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 PBKQ96KB5 322 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 KCNF1Q9H3M0 494 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 GPHNQ9NQX3 736 aaPredicted RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 COL4A3BPQ9Y5P4 624 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 SART1O43290 800 aaKnown RBP21.28■■□□□ 1
CCDC88B-202ENST00000356786 DBN1Q16643 649 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 ARHGEF25Q86VW2 580 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 FAM133AQ8N9E0 248 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 KIF2CQ99661 725 aa21.28■■□□□ 1
CCDC88B-202ENST00000356786 BFSP1Q12934 665 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 PPP2R5CQ13362 524 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 GSPT2Q8IYD1 628 aaKnown RBP21.27■■□□□ 1
CCDC88B-202ENST00000356786 GOLPH3LQ9H4A5 285 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 A2ML1A8K2U0 1454 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 M0R2C6 588 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 GAS7O60861 476 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 CYP2C19P33261 490 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 EIF3BP55884 814 aaKnown RBP21.27■■□□□ 1
CCDC88B-202ENST00000356786 MIER3Q7Z3K6 550 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 SPZ1Q9BXG8 430 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 TBK1Q9UHD2 729 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 PLAAQ9Y263 795 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 NUGGCQ68CJ6 796 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 AP1M1Q9BXS5 423 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 PSTPIP2Q9H939 334 aa21.27■■□□□ 1
CCDC88B-202ENST00000356786 TRIM37O94972 964 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 MYCLP12524 364 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 BCAMP50895 628 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 CTSWP56202 376 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 SLC8A3P57103 927 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 TOB2Q14106 344 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 FMR1NBQ8N0W7 255 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 PHKA1P46020 1223 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 OSBP2Q969R2 916 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 CCDC127Q96BQ5 260 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 IWS1Q96ST2 819 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 TSPYL2Q9H2G4 693 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 PDE6CP51160 858 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 KAZNQ674X7 775 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 SRLQ86TD4 932 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 SH2D4AQ9H788 454 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 LMTK3Q96Q04 1460 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 MYO1FO00160 1098 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 TADA3O75528 432 aa21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 ZYXQ15942 572 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-202ENST00000356786 DKC1O60832 514 aaKnown RBP eCLIP21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 NBPF9Q3BBW0 867 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 NXNQ6DKJ4 435 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 MB21D1Q8N884 522 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 SAAL1Q96ER3 474 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 ADAMTS1Q9UHI8 967 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 TRIM66O15016 1216 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 N4BP1O75113 896 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 CYP2E1P05181 493 aaPredicted RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms