RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ADGRF4Q8IZF3 695 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 ZNF713Q8N859 430 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-203ENST00000354674 TNFRSF25Q93038 417 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 RRP36Q96EU6 259 aaKnown RBP11.34□□□□□ -0.59
SYNE1-203ENST00000354674 VCPKMTQ9H867 229 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 GOPCQ9HD26 462 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 GPCPD1Q9NPB8 672 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 FANCGO15287 622 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 USP2O75604 605 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-203ENST00000354674 ZRSR1Q15695 479 aaKnown RBP11.34□□□□□ -0.59
SYNE1-203ENST00000354674 LONRF2Q1L5Z9 754 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 KCTD1Q719H9 257 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 SULF1Q8IWU6 871 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 CNNM3Q8NE01 707 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.34□□□□□ -0.59
SYNE1-203ENST00000354674 WDR18Q9BV38 432 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 IRAK4Q9NWZ3 460 aa11.34□□□□□ -0.59
SYNE1-203ENST00000354674 ADM5C9JUS6 153 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 M0R2N6 131 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 CAND2O75155 1236 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 ACTN3Q08043 901 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-203ENST00000354674 MYSM1Q5VVJ2 828 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 TYW1BQ6NUM6 668 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 DIS3L2Q8IYB7 885 aaKnown RBP11.33□□□□□ -0.6
SYNE1-203ENST00000354674 DAGLBQ8NCG7 672 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 PIGSQ96S52 555 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 FUT8Q9BYC5 575 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 GLIS2Q9BZE0 524 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-203ENST00000354674 SCAND2PQ9GZW5 306 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-203ENST00000354674 KIAA1683Q9H0B3 1180 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.33□□□□□ -0.6
SYNE1-203ENST00000354674 BTBD18B2RXH4 712 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 BMP3P12645 472 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 CCT5P48643 541 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 GALNT17Q6IS24 598 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 KRT26Q7Z3Y9 468 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 NOSTRINQ8IVI9 506 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 CFAP45Q9UL16 551 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 OTOFQ9HC10 1997 aa11.33□□□□□ -0.6
SYNE1-203ENST00000354674 PNMA6FA0A0J9YX94 578 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 KIF2AO00139 706 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 SSBP05455 408 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 PTPRAP18433 802 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 SAFBQ15424 915 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 CCDC96Q2M329 555 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 OXER1Q8TDS5 423 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 ZNF396Q96N95 335 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 WRNIP1Q96S55 665 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 RTEL1Q9NZ71 1219 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 RCOR1Q9UKL0 485 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 SAMM50Q9Y512 469 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 MYO1FO00160 1098 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 RHOXF2BP0C7M4 288 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 KRT2P35908 639 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 KCNV1Q6PIU1 500 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 AOPEPQ8N6M6 819 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 GPKOWQ92917 476 aaPredicted RBP eCLIP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 RHOXF2Q9BQY4 288 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 ZMYND12Q9H0C1 365 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 POLR3EQ9NVU0 708 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 ESYT2A0FGR8 921 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 BIN1O00499 593 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 ZBTB5O15062 677 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 KIF1CO43896 1103 aaKnown RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 CALML3P27482 149 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 CEP57Q86XR8 500 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 ZNF513Q8N8E2 541 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 LEO1Q8WVC0 666 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 RIN2Q8WYP3 895 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 ZKSCAN4Q969J2 545 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 USP28Q96RU2 1077 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 PICK1Q9NRD5 415 aa11.32□□□□□ -0.6
SYNE1-203ENST00000354674 SEC63Q9UGP8 760 aaKnown RBP11.32□□□□□ -0.6
SYNE1-203ENST00000354674 BAZ2BQ9UIF8 2168 aaKnown RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 USP17L10C9JJH3 530 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 PPP1R12AO14974 1030 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 PPP1R11O60927 126 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 SLC16A2P36021 539 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 NR5A1Q13285 461 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 SNX1Q13596 522 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 PPP1R18Q6NYC8 613 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 DLK2Q6UY11 383 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 CCDC148Q8NFR7 591 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 LPAR1Q92633 364 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 THOC1Q96FV9 657 aaKnown RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 NUP88Q99567 741 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 BIN2Q9UBW5 565 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 PCDHA4Q9UN74 947 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 EME2A4GXA9 379 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 TADA3O75528 432 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 CCDC84Q86UT8 332 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 CDCA5Q96FF9 252 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 SPATA32Q96LK8 384 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 VAT1LQ9HCJ6 419 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 G3BP2Q9UN86 482 aaKnown RBP11.31□□□□□ -0.6
SYNE1-203ENST00000354674 FZD1Q9UP38 647 aa11.31□□□□□ -0.6
SYNE1-203ENST00000354674 ADAMTS3O15072 1205 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 RPSAP08865 295 aaKnown RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 NLRP5P59047 1200 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 GNG11P61952 73 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms