RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TXNDC16Q9P2K2 825 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 ZBTB5O15062 677 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 ATP2A2P16615 1042 aaKnown RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 ERCC5P28715 1186 aaPredicted RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 Q3C1V9 767 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 MICALCLQ6ZW33 695 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 PPM1KQ8N3J5 372 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 C2orf69Q8N8R5 385 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 LY9Q9HBG7 655 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 CSF1RP07333 972 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 ABCB4P21439 1286 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 GTF2F1P35269 517 aaKnown RBP eCLIP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 PPP2R5AQ15172 486 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 CCDC63Q8NA47 563 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 SREK1Q8WXA9 508 aaKnown RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 PDIA6Q15084 440 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 ALX1Q15699 326 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 SPON1Q9HCB6 807 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 E7EVH7 732 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 C8orf74Q6P047 294 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 ZFP91Q96JP5 570 aaPredicted RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 CNOT6LQ96LI5 555 aaKnown RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 PLCD4Q9BRC7 762 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 SH3GLB2Q9NR46 395 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 IQGAP1P46940 1657 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 INO80B-WBP1J3KQ70 363 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 SLFN14P0C7P3 912 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 NKX1-1Q15270 411 aaPredicted RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 APOBEC3FQ8IUX4 373 aaKnown RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 NSUN4Q96CB9 384 aaKnown RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 INO80BQ9C086 356 aaPredicted RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 STMN4Q9H169 189 aaPredicted RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 FAM204AQ9H8W3 233 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 RAVER2Q9HCJ3 691 aaKnown RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 KMT5AQ9NQR1 393 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 PNMA3Q9UL41 463 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 SRPRBQ9Y5M8 271 aaKnown RBP16.39■□□□□ 0.21
COL17A1-201ENST00000353479 FAM169AQ9Y6X4 670 aa16.39■□□□□ 0.21
COL17A1-201ENST00000353479 A0A087WWV3 80 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L10C9JJH3 530 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 PEX26Q7Z412 305 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 CCDC51Q96ER9 411 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 SELENOSQ9BQE4 189 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 CEMIPQ8WUJ3 1361 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 ARHGEF6Q15052 776 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 MTERF2Q49AM1 385 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 RETREG2Q8NC44 543 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 EPSTI1Q96J88 318 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 TIGD1Q96MW7 591 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 CNTNAP4Q9C0A0 1308 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 GAP43P17677 238 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 NR2F2P24468 414 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 ZNF365Q70YC5 407 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 UBLCP1Q8WVY7 318 aaPredicted RBP16.38■□□□□ 0.21
COL17A1-201ENST00000353479 MED10Q9BTT4 135 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 STK17AQ9UEE5 414 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 PLCG1P19174 1290 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 IPO4Q8TEX9 1081 aaKnown RBP16.38■□□□□ 0.21
COL17A1-201ENST00000353479 PFKFB3Q16875 520 aaPredicted RBP16.38■□□□□ 0.21
COL17A1-201ENST00000353479 SYCE1Q8N0S2 351 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 KRT222Q8N1A0 295 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 NBPF3Q9H094 633 aa16.38■□□□□ 0.21
COL17A1-201ENST00000353479 USP32Q8NFA0 1604 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 STAMBPO95630 424 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 SPP2Q13103 211 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 RASA3Q14644 834 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 DPCR1Q3MIW9 517 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 TMEM131LA2VDJ0 1609 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 RPS6KA1Q15418 735 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 RCSD1Q6JBY9 416 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 JPH2Q9BR39 696 aaPredicted RBP16.37■□□□□ 0.21
COL17A1-201ENST00000353479 TRIM31Q9BZY9 425 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 FEM1BQ9UK73 627 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 FER1L4A9Z1Z3 1794 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 MROH2AA6NES4 1674 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 CTTNQ14247 550 aaKnown RBP16.37■□□□□ 0.21
COL17A1-201ENST00000353479 ZNRF3Q9ULT6 936 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 PCDHA6Q9UN73 950 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 PCDHA8Q9Y5H6 950 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 ATF7P17544 494 aaPredicted RBP16.37■□□□□ 0.21
COL17A1-201ENST00000353479 COPB1P53618 953 aaKnown RBP16.37■□□□□ 0.21
COL17A1-201ENST00000353479 FAM193BQ96PV7 902 aaPredicted RBP16.37■□□□□ 0.21
COL17A1-201ENST00000353479 DESI2Q9BSY9 194 aa16.37■□□□□ 0.21
COL17A1-201ENST00000353479 PSAPP07602 524 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 CARD6Q9BX69 1037 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 PNPLA7Q6ZV29 1317 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L15C9J2P7 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L13C9JLJ4 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L11C9JVI0 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L18D6R9N7 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L22D6RA61 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L17D6RBQ6 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L19D6RCP7 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L20D6RJB6 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 PIK3CAP42336 1068 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L24Q0WX57 530 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 USP17L6PQ6QN14 398 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 TUBGCP2Q9BSJ2 902 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 HOXC10Q9NYD6 342 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 PLA2G4BP0C869 781 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms