RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 SMCHD1A6NHR9 2005 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 MEIS2O14770 477 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 NKRFO15226 690 aaKnown RBP eCLIP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 ADAMTS4O75173 837 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 EIF3JO75822 258 aaKnown RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 GJA9P57773 515 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 TNFAIP2Q03169 654 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 WWC2Q6AWC2 1192 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 XRRA1Q6P2D8 792 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 CPLX2Q6PUV4 134 aaKnown RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 HEATR3Q7Z4Q2 680 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 FAM177A1Q8N128 213 aaPredicted RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 PAWRQ96IZ0 340 aaKnown RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 PDCD2LQ9BRP1 358 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 TSEN34Q9BSV6 310 aaKnown RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 HTATIP2Q9BUP3 242 aa15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 GNEQ9Y223 722 aaKnown RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 MKI67P46013 3256 aaKnown RBP15.06■□□□□ 0
HLA-DQA1-201ENST00000343139 ESYT2A0FGR8 921 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 PFKFB2O60825 505 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 STAM2O75886 525 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 NR3C2P08235 984 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 SCG2P13521 617 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 HOXA13P31271 388 aaPredicted RBP15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 NEK4P51957 841 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 AK2P54819 239 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 LRRC41Q15345 812 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 DUSP28Q4G0W2 176 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 VSIG10LQ86VR7 867 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 FBXO16Q8IX29 292 aaPredicted RBP15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 KLHDC9Q8NEP7 349 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 SCFD2Q8WU76 684 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 CCDC12Q8WUD4 166 aaPredicted RBP15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 C11orf49Q9H6J7 331 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 SPC25Q9HBM1 224 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 RIC8AQ9NPQ8 531 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 LCTP09848 1927 aa15.05■□□□□ -0
HLA-DQA1-201ENST00000343139 SYNRGQ9UMZ2 1314 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 hCG_1642624A0A1W2PR95 340 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 KBTBD13C9JR72 458 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 STXBP3O00186 592 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 CPLX1O14810 134 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 CDKL5O76039 1030 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 CCT2P78371 535 aaKnown RBP15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 AKAP17AQ02040 695 aaKnown RBP15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 PGM5Q15124 567 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 PKN1Q16512 942 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 TRIM22Q8IYM9 498 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 SMARCC2Q8TAQ2 1214 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 KIF2CQ99661 725 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 SLKQ9H2G2 1235 aaPredicted RBP15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 TPCN1Q9ULQ1 816 aa15.04■□□□□ -0
HLA-DQA1-201ENST00000343139 ADCY6O43306 1168 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 SMPD1P17405 629 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 EIF2AK2P19525 551 aaKnown RBP15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 ADCYAP1R1P41586 468 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 NAPAP54920 295 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 MCTP2Q6DN12 878 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 CCSAPQ6IQ19 270 aaPredicted RBP15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 USP17L6PQ6QN14 398 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 EEPD1Q7L9B9 569 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 DIS3LQ8TF46 1054 aaKnown RBP15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 GPKOWQ92917 476 aaPredicted RBP eCLIP15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 WDR11Q9BZH6 1224 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 NCOA5Q9HCD5 579 aaKnown RBP15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 SH3GLB2Q9NR46 395 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 PDGFCQ9NRA1 345 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 PHF24Q9UPV7 400 aa15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 BAZ2BQ9UIF8 2168 aaKnown RBP15.03■□□□□ -0
HLA-DQA1-201ENST00000343139 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 MOXD2PA6NHM9 499 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 FOSP01100 380 aaPredicted RBP15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 TGFB3P10600 412 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 CCND2P30279 289 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 SCRN1Q12765 414 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 TTLL4Q14679 1199 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 C1orf53Q5VUE5 145 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 ANO1Q5XXA6 986 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 TYW1BQ6NUM6 668 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 KCNV1Q6PIU1 500 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 PCSK9Q8NBP7 692 aaKnown RBP15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 PHKBQ93100 1093 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 ZMYND12Q9H0C1 365 aa15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 DDX49Q9Y6V7 483 aaKnown RBP15.02■□□□□ -0
HLA-DQA1-201ENST00000343139 SMCO2A6NFE2 343 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 DEXIO95424 95 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 PGK1P00558 417 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 ADCY7P51828 1080 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 SSRP1Q08945 709 aaKnown RBP15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 AP3B2Q13367 1082 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 GJC2Q5T442 439 aaPredicted RBP15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 PCNX4Q63HM2 1172 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 CCDC62Q6P9F0 684 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 TLK2Q86UE8 772 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 FCHSD1Q86WN1 690 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 CCDC148Q8NFR7 591 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 SLC26A6Q9BXS9 759 aa15.02□□□□□ -0.01
HLA-DQA1-201ENST00000343139 MYH6P13533 1939 aa15.01□□□□□ -0.01
HLA-DQA1-201ENST00000343139 LRRC37A2A6NM11 1700 aa15.01□□□□□ -0.01
HLA-DQA1-201ENST00000343139 STK36Q9NRP7 1315 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms