RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 LAMA3Q16787 3333 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 PPP1R11O60927 126 aaPredicted RBP23.4■■□□□ 1.34
SYNE2-201ENST00000341472 CPT1AP50416 773 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 TTLL4Q14679 1199 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 STXBP2Q15833 593 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 SLC35G1Q2M3R5 365 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 C9orf50Q5SZB4 431 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 FAM126BQ8IXS8 530 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 GPHNQ9NQX3 736 aaPredicted RBP23.4■■□□□ 1.34
SYNE2-201ENST00000341472 MAP3K20Q9NYL2 800 aaKnown RBP23.4■■□□□ 1.34
SYNE2-201ENST00000341472 SZT2Q5T011 3432 aa23.4■■□□□ 1.34
SYNE2-201ENST00000341472 GRIN2DO15399 1336 aa23.39■■□□□ 1.34
SYNE2-201ENST00000341472 PNMA6FA0A0J9YX94 578 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 FPGSQ05932 587 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 NFXL1Q6ZNB6 911 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 SAMD3Q8N6K7 520 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 CCDC136Q96JN2 1154 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 TMEM87BQ96K49 555 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 MAP3K14Q99558 947 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 LY9Q9HBG7 655 aa23.39■■□□□ 1.33
SYNE2-201ENST00000341472 CYTH3O43739 400 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 KPNA6O60684 536 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 EIF3JO75822 258 aaKnown RBP23.38■■□□□ 1.33
SYNE2-201ENST00000341472 MYL3P08590 195 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 HSD17B4P51659 736 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 PSMC6P62333 389 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 SEPT14Q6ZU15 432 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 ZNF654Q8IZM8 581 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 DEFB123Q8N688 67 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 CTCFLQ8NI51 663 aaPredicted RBP23.38■■□□□ 1.33
SYNE2-201ENST00000341472 COPS5Q92905 334 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 LAMA4Q16363 1823 aa23.38■■□□□ 1.33
SYNE2-201ENST00000341472 OPLAHO14841 1288 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 DDAH1O94760 285 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 CD4P01730 458 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 NR3C2P08235 984 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 EIF2AK2P19525 551 aaKnown RBP23.37■■□□□ 1.33
SYNE2-201ENST00000341472 KIF5BP33176 963 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 EPHB4P54760 987 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 GHRHRQ02643 423 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 RNF20Q5VTR2 975 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 MFSD5Q6N075 450 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 CCDC62Q6P9F0 684 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 MTG1Q9BT17 334 aaPredicted RBP23.37■■□□□ 1.33
SYNE2-201ENST00000341472 PXMP2Q9NR77 195 aa23.37■■□□□ 1.33
SYNE2-201ENST00000341472 MCM3APO60318 1980 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 CCDC69A6NI79 296 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 A6NJR5 290 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 GCOM1H8Y6P7 765 aaPredicted RBP23.36■■□□□ 1.33
SYNE2-201ENST00000341472 POLR2MP0CAP2 368 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 GNAQP50148 359 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 PIBF1Q8WXW3 757 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 LZTS2Q9BRK4 669 aa23.36■■□□□ 1.33
SYNE2-201ENST00000341472 SH2B2O14492 632 aaPredicted RBP23.35■■□□□ 1.33
SYNE2-201ENST00000341472 CDC45O75419 566 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 ARIH2O95376 493 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 SMARCA1P28370 1054 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 HOXA13P31271 388 aaPredicted RBP23.35■■□□□ 1.33
SYNE2-201ENST00000341472 LIFRP42702 1097 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 PURAQ00577 322 aaKnown RBP23.35■■□□□ 1.33
SYNE2-201ENST00000341472 TMEM199Q8N511 208 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 MYL10Q9BUA6 226 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 TRPV6Q9H1D0 765 aa23.35■■□□□ 1.33
SYNE2-201ENST00000341472 PPIGQ13427 754 aaKnown RBP eCLIP23.34■■□□□ 1.33
SYNE2-201ENST00000341472 LY6KQ17RY6 165 aa23.34■■□□□ 1.33
SYNE2-201ENST00000341472 Q7L0L9 218 aa23.34■■□□□ 1.33
SYNE2-201ENST00000341472 RRP36Q96EU6 259 aaKnown RBP23.34■■□□□ 1.33
SYNE2-201ENST00000341472 PPP1R12CQ9BZL4 782 aa23.34■■□□□ 1.33
SYNE2-201ENST00000341472 GH1P01241 217 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 CALM1P0DP23 149 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 CALM2P0DP24 149 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 CALM3P0DP25 149 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 MYCLP12524 364 aaPredicted RBP23.33■■□□□ 1.33
SYNE2-201ENST00000341472 FAM109BQ6ICB4 259 aaPredicted RBP23.33■■□□□ 1.33
SYNE2-201ENST00000341472 RNPC3Q96LT9 517 aaKnown RBP23.33■■□□□ 1.33
SYNE2-201ENST00000341472 PDCD2LQ9BRP1 358 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 SPZ1Q9BXG8 430 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 ALDH8A1Q9H2A2 487 aaPredicted RBP23.33■■□□□ 1.33
SYNE2-201ENST00000341472 DDX41Q9UJV9 622 aaKnown RBP23.33■■□□□ 1.33
SYNE2-201ENST00000341472 SLC12A7Q9Y666 1083 aa23.33■■□□□ 1.33
SYNE2-201ENST00000341472 SUPT20HL2P0C7V6 817 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 CYP2C18P33260 490 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 COL9A3Q14050 684 aaPredicted RBP23.32■■□□□ 1.32
SYNE2-201ENST00000341472 VSIG10LQ86VR7 867 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 FCHSD1Q86WN1 690 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 AFG1LQ8WV93 481 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 NEK1Q96PY6 1258 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 LRRC2Q9BYS8 371 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 HIPK3Q9H422 1215 aa23.32■■□□□ 1.32
SYNE2-201ENST00000341472 B4GALT4O60513 344 aa23.31■■□□□ 1.32
SYNE2-201ENST00000341472 CSF2RAP15509 400 aa23.31■■□□□ 1.32
SYNE2-201ENST00000341472 NBPF20Q3BBV1 942 aa23.31■■□□□ 1.32
SYNE2-201ENST00000341472 SYNE3Q6ZMZ3 975 aa23.31■■□□□ 1.32
SYNE2-201ENST00000341472 MTMR10Q9NXD2 777 aa23.31■■□□□ 1.32
SYNE2-201ENST00000341472 MRVI1Q9Y6F6 885 aa23.31■■□□□ 1.32
SYNE2-201ENST00000341472 SMAD3P84022 425 aaKnown RBP23.3■■□□□ 1.32
SYNE2-201ENST00000341472 ARHGAP1Q07960 439 aa23.3■■□□□ 1.32
SYNE2-201ENST00000341472 LAMC2Q13753 1193 aa23.3■■□□□ 1.32
SYNE2-201ENST00000341472 FAM47CQ5HY64 1035 aa23.3■■□□□ 1.32
SYNE2-201ENST00000341472 C16orf59Q7L2K0 433 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms