RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TMEM39BQ9GZU3 492 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 CPSF1Q10570 1443 aaKnown RBP9.32□□□□□ -0.92
HMGB1-203ENST00000341423 AVPR1AP37288 418 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 HDLBPQ00341 1268 aaKnown RBP9.32□□□□□ -0.92
HMGB1-203ENST00000341423 PPM1LQ5SGD2 360 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 JAKMIP2Q96AA8 810 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 PLVAPQ9BX97 442 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 MAGED2Q9UNF1 606 aaPredicted RBP9.32□□□□□ -0.92
HMGB1-203ENST00000341423 AXIN2Q9Y2T1 843 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 H7C4K7 107 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 ELNP15502 786 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 ATP2A2P16615 1042 aaKnown RBP9.32□□□□□ -0.92
HMGB1-203ENST00000341423 GDAP1Q8TB36 358 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 C11orf84Q9BUA3 381 aaPredicted RBP9.32□□□□□ -0.92
HMGB1-203ENST00000341423 BCO2Q9BYV7 579 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 TBKBP1A7MCY6 615 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 KCNB1Q14721 858 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 CEP170P1Q96L14 293 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 GPR20Q99678 358 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 UBN2Q6ZU65 1347 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 ZNF532Q9HCE3 1301 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 NEURL1BA8MQ27 555 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 STXBP3O00186 592 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 GTF2F1P35269 517 aaKnown RBP eCLIP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 PDE6CP51160 858 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 POSTNQ15063 836 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 OTOP2Q7RTS6 562 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 STKLD1Q8NE28 680 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 TAF4BQ92750 862 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 MMTAG2Q9BU76 263 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 WDR11Q9BZH6 1224 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SCUBE2Q9NQ36 999 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 DONSONQ9NYP3 566 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 LARSQ9P2J5 1176 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 NCKAP1Q9Y2A7 1128 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 DNAJB2P25686 324 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 TSTA3Q13630 321 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 FAM47AQ5JRC9 791 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 GJC2Q5T442 439 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 NBPF12Q5TAG4 269 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SPRYD7Q5W111 196 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 CCDC149Q6ZUS6 474 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 ZSCAN1Q8NBB4 408 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 U2AF1L4Q8WU68 220 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 ARHGAP31Q2M1Z3 1444 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SPDYE2BA6NHP3 402 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SLC15A5A6NIM6 579 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SPDYE6P0CI01 402 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 AASDHQ4L235 1098 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 PPFIBP1Q86W92 1011 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 FAM114A1Q8IWE2 563 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 EFCAB3Q8N7B9 438 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 ZNF296Q8WUU4 475 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SPAG5Q96R06 1193 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 LRRC4Q9HBW1 653 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 RNF186Q9NXI6 227 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 PIN4Q9Y237 131 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 LAMTOR5O43504 91 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 STK10O94804 968 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 MTIF2P46199 727 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 PRR16Q569H4 304 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SPDYE1Q8NFV5 336 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 GGT7Q9UJ14 662 aa9.31□□□□□ -0.92
HMGB1-203ENST00000341423 SCAF8Q9UPN6 1271 aaKnown RBP9.31□□□□□ -0.92
HMGB1-203ENST00000341423 IPO5O00410 1097 aaKnown RBP9.3□□□□□ -0.92
HMGB1-203ENST00000341423 STAT6P42226 847 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 CAGE1Q8TC20 777 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 NEK1Q96PY6 1258 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 PRRX2Q99811 253 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ABHD16BQ9H3Z7 469 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 SMARCAD1Q9H4L7 1026 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ANKFY1Q9P2R3 1169 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 TTLL3Q9Y4R7 772 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 GOLGA8CPA6NN73 597 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 SMTNL1A8MU46 457 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ASIC1P78348 528 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 CREMQ03060 361 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ITPK1Q13572 414 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ZKSCAN3Q9BRR0 538 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ZNF577Q9BSK1 485 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 TTLL13PA6NNM8 815 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 PRPF40AO75400 957 aaKnown RBP9.3□□□□□ -0.92
HMGB1-203ENST00000341423 EPHB1P54762 984 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 SPATA2LQ8IUW3 424 aaPredicted RBP9.3□□□□□ -0.92
HMGB1-203ENST00000341423 TIFAQ96CG3 184 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ANKRD36BP1Q96IX9 119 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ZNF558Q96NG5 402 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 TTC1Q99614 292 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 MAK16Q9BXY0 300 aaKnown RBP9.3□□□□□ -0.92
HMGB1-203ENST00000341423 BRD9Q9H8M2 597 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 ST7Q9NRC1 585 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 CDC42BPGQ6DT37 1551 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 MAGEB2O15479 319 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 CCT2P78371 535 aaKnown RBP9.3□□□□□ -0.92
HMGB1-203ENST00000341423 SEPT2Q15019 361 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 SNX17Q15036 470 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 AFG1LQ8WV93 481 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 PSPC1Q8WXF1 523 aaKnown RBP9.3□□□□□ -0.92
HMGB1-203ENST00000341423 GTPBP4Q9BZE4 634 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms