RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LUC7L2Q9Y383 392 aaKnown RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 PCDHA1Q9Y5I3 950 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 IGKV6D-41A0A0C4DH26 115 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 ECE2O60344 883 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 TADA3O75528 432 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 QRICH1Q2TAL8 776 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 KRT79Q5XKE5 535 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 CUL5Q93034 780 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 RGS17Q9UGC6 210 aaPredicted RBP11.56□□□□□ -0.56
LIMA1-201ENST00000341247 SMCHD1A6NHR9 2005 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 LGALS16A8MUM7 142 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 CCNE1P24864 410 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 STAT3P40763 770 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 JAG1P78504 1218 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 AMPD3Q01432 767 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 SLFN13Q68D06 897 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 TMC4Q7Z404 712 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 DDX41Q9UJV9 622 aaKnown RBP11.56□□□□□ -0.56
LIMA1-201ENST00000341247 ZBTB5O15062 677 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 TUBB4AP04350 444 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 NT5C2P49902 561 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 TSR1Q2NL82 804 aaKnown RBP11.56□□□□□ -0.56
LIMA1-201ENST00000341247 CYP26C1Q6V0L0 522 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 TMTC1Q8IUR5 882 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 NAA15Q9BXJ9 866 aaKnown RBP11.56□□□□□ -0.56
LIMA1-201ENST00000341247 SEMA6BQ9H3T3 888 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 FAM198AQ9UFP1 575 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 SWAP70Q9UH65 585 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 MRFAP1Q9Y605 127 aa11.56□□□□□ -0.56
LIMA1-201ENST00000341247 QSER1Q2KHR3 1735 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 NPHP3-ACAD11A0A0J9YXS1 232 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 SNHG28P0DPA3 235 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 MAP3K9P80192 1104 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 SH3BP5LQ7L8J4 393 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 DDX12PQ92771 950 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 ZFP91Q96JP5 570 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 C7orf25Q9BPX7 421 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 KANSL2Q9H9L4 492 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 RIC8AQ9NPQ8 531 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 OGFRQ9NZT2 677 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 ESYT2A0FGR8 921 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 E9PMD0 336 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 ENC1O14682 589 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 NOVP48745 357 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 MRPL12P52815 198 aaKnown RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 HHIPL2Q6UWX4 724 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 SLC30A10Q6XR72 485 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 FAM207AQ9NSI2 230 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 RNF216Q9NWF9 866 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 SCAF8Q9UPN6 1271 aaKnown RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 ITIH6Q6UXX5 1313 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 H0YIN7 160 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 ICA1Q05084 483 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 CDC37Q16543 378 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 NELFCDQ8IXH7 590 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 CCDC155Q8N6L0 562 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 OR8K1Q8NGG5 319 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 HAS1Q92839 578 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 DHTKD1Q96HY7 919 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 THAP9Q9H5L6 903 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 PCDHA12Q9UN75 941 aa11.55□□□□□ -0.56
LIMA1-201ENST00000341247 EPN1Q9Y6I3 576 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-201ENST00000341247 TNS1Q9HBL0 1735 aaKnown RBP11.54□□□□□ -0.56
LIMA1-201ENST00000341247 CLRN2A0PK11 232 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 SMARCA1P28370 1054 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 CYP27A1Q02318 531 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 CNNM4Q6P4Q7 775 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 FEZ1Q99689 392 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 TANGO6Q9C0B7 1094 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.54□□□□□ -0.56
LIMA1-201ENST00000341247 COL4A5P29400 1685 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 PLSCR1O15162 318 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 EEF1GP26641 437 aaKnown RBP11.54□□□□□ -0.56
LIMA1-201ENST00000341247 HOXA13P31271 388 aaPredicted RBP11.54□□□□□ -0.56
LIMA1-201ENST00000341247 PODNQ7Z5L7 613 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 ZNF507Q8TCN5 953 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 RAB34Q9BZG1 259 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 CUEDC2Q9H467 287 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 KIAA1024Q9UPX6 916 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 SUGT1Q9Y2Z0 365 aa11.54□□□□□ -0.56
LIMA1-201ENST00000341247 POTEB3A0JP26 581 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 POTECB2RU33 542 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 TCP10L2B9ZVM9 353 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 NDUFA10O95299 355 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 RRP1BQ14684 758 aaKnown RBP11.53□□□□□ -0.56
LIMA1-201ENST00000341247 ZYXQ15942 572 aaKnown RBP11.53□□□□□ -0.56
LIMA1-201ENST00000341247 GPATCH4Q5T3I0 446 aaKnown RBP11.53□□□□□ -0.56
LIMA1-201ENST00000341247 POTEBQ6S5H4 581 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 RAD54LQ92698 747 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 FGFBP2Q9BYJ0 223 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 BICDL2A1A5D9 508 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 EFCAB8A8MWE9 144 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 MEIS1O00470 390 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 GH2P01242 217 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 EZH2Q15910 746 aaKnown RBP11.53□□□□□ -0.56
LIMA1-201ENST00000341247 PRR16Q569H4 304 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 CCDC51Q96ER9 411 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 MMRN2Q9H8L6 949 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 PI4KBQ9UBF8 816 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 REXO2Q9Y3B8 237 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms