RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 AP3B2Q13367 1082 aa25.37■■□□□ 1.65
SDC3-202ENST00000339394 NSUN6Q8TEA1 469 aaKnown RBP25.37■■□□□ 1.65
SDC3-202ENST00000339394 MAML3Q96JK9 1138 aa25.37■■□□□ 1.65
SDC3-202ENST00000339394 APBA2Q99767 749 aa25.37■■□□□ 1.65
SDC3-202ENST00000339394 ADD3Q9UEY8 706 aaKnown RBP25.37■■□□□ 1.65
SDC3-202ENST00000339394 CENPFP49454 3210 aa25.37■■□□□ 1.65
SDC3-202ENST00000339394 ARHGEF16Q5VV41 709 aa25.36■■□□□ 1.65
SDC3-202ENST00000339394 MCTP2Q6DN12 878 aa25.36■■□□□ 1.65
SDC3-202ENST00000339394 ANO3Q9BYT9 981 aa25.36■■□□□ 1.65
SDC3-202ENST00000339394 PXMP2Q9NR77 195 aa25.36■■□□□ 1.65
SDC3-202ENST00000339394 STX6O43752 255 aa25.35■■□□□ 1.65
SDC3-202ENST00000339394 EIF2AK2P19525 551 aaKnown RBP25.35■■□□□ 1.65
SDC3-202ENST00000339394 ALDH5A1P51649 535 aaPredicted RBP25.35■■□□□ 1.65
SDC3-202ENST00000339394 TNFRSF25Q93038 417 aa25.35■■□□□ 1.65
SDC3-202ENST00000339394 FOXP1Q9H334 677 aaPredicted RBP25.35■■□□□ 1.65
SDC3-202ENST00000339394 VPS37CA5D8V6 355 aaPredicted RBP25.35■■□□□ 1.65
SDC3-202ENST00000339394 PRMT2P55345 433 aa25.35■■□□□ 1.65
SDC3-202ENST00000339394 IRF5Q13568 498 aa25.35■■□□□ 1.65
SDC3-202ENST00000339394 CCL14Q16627 93 aa25.35■■□□□ 1.65
SDC3-202ENST00000339394 ZNF467Q7Z7K2 595 aaPredicted RBP25.35■■□□□ 1.65
SDC3-202ENST00000339394 RPTORQ8N122 1335 aa25.34■■□□□ 1.65
SDC3-202ENST00000339394 UBXN2AP68543 259 aa25.34■■□□□ 1.65
SDC3-202ENST00000339394 EARS2Q5JPH6 523 aaKnown RBP25.34■■□□□ 1.65
SDC3-202ENST00000339394 MCTP1Q6DN14 999 aa25.34■■□□□ 1.65
SDC3-202ENST00000339394 RAET1EQ8TD07 263 aa25.34■■□□□ 1.65
SDC3-202ENST00000339394 IPO9Q96P70 1041 aaKnown RBP25.34■■□□□ 1.65
SDC3-202ENST00000339394 PDCD2LQ9BRP1 358 aa25.34■■□□□ 1.65
SDC3-202ENST00000339394 FLRT1Q9NZU1 646 aa25.34■■□□□ 1.65
SDC3-202ENST00000339394 DDX49Q9Y6V7 483 aaKnown RBP25.34■■□□□ 1.65
SDC3-202ENST00000339394 FRMPD4Q14CM0 1322 aa25.33■■□□□ 1.65
SDC3-202ENST00000339394 PLXNB2O15031 1838 aa25.33■■□□□ 1.65
SDC3-202ENST00000339394 KIF28PB7ZC32 967 aa25.33■■□□□ 1.65
SDC3-202ENST00000339394 U2AF2P26368 475 aaKnown RBP eCLIP25.33■■□□□ 1.65
SDC3-202ENST00000339394 GNL2Q13823 731 aaKnown RBP25.33■■□□□ 1.65
SDC3-202ENST00000339394 KRT25Q7Z3Z0 450 aa25.33■■□□□ 1.65
SDC3-202ENST00000339394 MTMR6Q9Y217 621 aa25.33■■□□□ 1.65
SDC3-202ENST00000339394 ZNF236Q9UL36 1845 aa25.33■■□□□ 1.64
SDC3-202ENST00000339394 CCDC194A0A1B0GVG4 234 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 MGAMO43451 1857 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 PDIA4P13667 645 aaKnown RBP25.32■■□□□ 1.64
SDC3-202ENST00000339394 PGM5Q15124 567 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 MAMDC4Q6UXC1 1216 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 PIK3AP1Q6ZUJ8 805 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 DOCK3Q8IZD9 2030 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 IWS1Q96ST2 819 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 TINF2Q9BSI4 451 aa25.32■■□□□ 1.64
SDC3-202ENST00000339394 LOC102724159A0A0B4J2E5 919 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 ASB14A6NK59 587 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 NR3C2P08235 984 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 EDNRBP24530 442 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 SREBF1P36956 1147 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 PKP1Q13835 747 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 PWP2Q15269 919 aaKnown RBP25.31■■□□□ 1.64
SDC3-202ENST00000339394 OLFML2BQ68BL8 750 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 NOSTRINQ8IVI9 506 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 IL31RAQ8NI17 732 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 TBCKQ8TEA7 893 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 EHMT1Q9H9B1 1298 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 IGHA2P01877 340 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 NONOQ15233 471 aaKnown RBP eCLIP25.31■■□□□ 1.641e-6■■■■□ 22.7
SDC3-202ENST00000339394 CTU1Q7Z7A3 348 aaKnown RBP25.31■■□□□ 1.64
SDC3-202ENST00000339394 VSIG10LQ86VR7 867 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 MSL3Q8N5Y2 521 aaKnown RBP25.31■■□□□ 1.64
SDC3-202ENST00000339394 MORC4Q8TE76 937 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 TRIB2Q92519 343 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 PTPN22Q9Y2R2 807 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 PTCH2Q9Y6C5 1203 aa25.31■■□□□ 1.64
SDC3-202ENST00000339394 FAM205CA6NFA0 338 aa25.3■■□□□ 1.64
SDC3-202ENST00000339394 B4DLN1 442 aa25.3■■□□□ 1.64
SDC3-202ENST00000339394 ARMCX2Q7L311 632 aa25.3■■□□□ 1.64
SDC3-202ENST00000339394 PXYLP1Q8TE99 480 aa25.3■■□□□ 1.64
SDC3-202ENST00000339394 CRYGNQ8WXF5 182 aa25.3■■□□□ 1.64
SDC3-202ENST00000339394 MPHOSPH6Q99547 160 aaKnown RBP25.3■■□□□ 1.64
SDC3-202ENST00000339394 PRDM10Q9NQV6 1147 aa25.3■■□□□ 1.64
SDC3-202ENST00000339394 SYNGAP1Q96PV0 1343 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 ADCY3O60266 1144 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 MYCLP12524 364 aaPredicted RBP25.29■■□□□ 1.64
SDC3-202ENST00000339394 ELNP15502 786 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 DDIT3P35638 169 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 ARHGAP4P98171 946 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 INF2Q27J81 1249 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 PCNX4Q63HM2 1172 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 FERMT3Q86UX7 667 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 TRMT44Q8IYL2 757 aaKnown RBP25.29■■□□□ 1.64
SDC3-202ENST00000339394 RBBP6Q7Z6E9 1792 aaKnown RBP25.29■■□□□ 1.64
SDC3-202ENST00000339394 CASP8AP2Q9UKL3 1982 aa25.29■■□□□ 1.64
SDC3-202ENST00000339394 SNAI1O95863 264 aaPredicted RBP25.28■■□□□ 1.64
SDC3-202ENST00000339394 CYP2C19P33261 490 aa25.28■■□□□ 1.64
SDC3-202ENST00000339394 MRPS9P82933 396 aaKnown RBP25.28■■□□□ 1.64
SDC3-202ENST00000339394 PDE4DQ08499 809 aa25.28■■□□□ 1.64
SDC3-202ENST00000339394 STXBP2Q15833 593 aa25.28■■□□□ 1.64
SDC3-202ENST00000339394 ZFP91Q96JP5 570 aaPredicted RBP25.28■■□□□ 1.64
SDC3-202ENST00000339394 EDIL3O43854 480 aa25.27■■□□□ 1.64
SDC3-202ENST00000339394 CCND2P30279 289 aa25.27■■□□□ 1.64
SDC3-202ENST00000339394 XRRA1Q6P2D8 792 aa25.27■■□□□ 1.64
SDC3-202ENST00000339394 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.27■■□□□ 1.64
SDC3-202ENST00000339394 CYP3A4P08684 503 aa25.27■■□□□ 1.64
SDC3-202ENST00000339394 USP11P51784 963 aa25.27■■□□□ 1.64
SDC3-202ENST00000339394 RTEL1Q9NZ71 1219 aa25.27■■□□□ 1.64
SDC3-202ENST00000339394 LCTP09848 1927 aa25.26■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms