RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 NPY5RQ15761 445 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 TMTC3Q6ZXV5 915 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 SRBD1Q8N5C6 995 aaKnown RBP15.21■□□□□ 0.02
SYNE3-201ENST00000334258 NOC3LQ8WTT2 800 aaKnown RBP15.21■□□□□ 0.02
SYNE3-201ENST00000334258 TNFRSF25Q93038 417 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 PLCD4Q9BRC7 762 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 CD248Q9HCU0 757 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 PPANQ9NQ55 473 aaKnown RBP15.21■□□□□ 0.02
SYNE3-201ENST00000334258 THRAP3Q9Y2W1 955 aaKnown RBP15.21■□□□□ 0.02
SYNE3-201ENST00000334258 MAGEB6P1A0A0J9YX57 407 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 CCDC194A0A1B0GVG4 234 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 ZSCAN5CA6NGD5 496 aaPredicted RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 PDE8AO60658 829 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 HEXIM1O94992 359 aaKnown RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 CALM1P0DP23 149 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 CALM2P0DP24 149 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 CALM3P0DP25 149 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 NR1D1P20393 614 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 TDRD12Q587J7 1177 aaKnown RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 NAA35Q5VZE5 725 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 ANKRD40Q6AI12 368 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 RRAGAQ7L523 313 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 P2RX5Q93086 422 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 COL14A1Q05707 1796 aaKnown RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 BICDL2A1A5D9 508 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 GOLGA6L10A6NI86 522 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 RASSF10A6NK89 507 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 EPB41P11171 864 aaKnown RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 GSCP56915 257 aaPredicted RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 RASSF7Q02833 373 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 TROAPQ12815 778 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 CFAP221Q4G0U5 840 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 SPATS2Q86XZ4 545 aaKnown RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 ZNF34Q8IZ26 560 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 CEP120Q8N960 986 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 PURBQ96QR8 312 aaKnown RBP15.2■□□□□ 0.02
SYNE3-201ENST00000334258 EPN3Q9H201 632 aa15.2■□□□□ 0.02
SYNE3-201ENST00000334258 FAM153BP0C7A2 387 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 PAK2Q13177 524 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 HLTFQ14527 1009 aaKnown RBP eCLIP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 SLC4A8Q2Y0W8 1093 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 FAM153CQ494X1 144 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 RPAINQ86UA6 219 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 SEPT12Q8IYM1 358 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 CDCA7Q9BWT1 371 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 TTYH3Q9C0H2 523 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 FAM153AQ9UHL3 310 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 ADAMTS3O15072 1205 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 SSBP05455 408 aaKnown RBP eCLIP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 SF3B2Q13435 895 aaKnown RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 ARL6IP4Q66PJ3 421 aaKnown RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 CACNA2D4Q7Z3S7 1137 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 CEP57Q86XR8 500 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 GPKOWQ92917 476 aaPredicted RBP eCLIP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 DHTKD1Q96HY7 919 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 CCDC114Q96M63 670 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 DUSP9Q99956 384 aaKnown RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 ARHGAP20Q9P2F6 1191 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 PNPLA7Q6ZV29 1317 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 NMT2O60551 498 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 PPP1R37O75864 691 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 TRIM37O94972 964 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 GLI1P08151 1106 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 ATP2B2Q01814 1243 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 VPS72Q15906 364 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 GIMAP8Q8ND71 665 aaPredicted RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 CERKQ8TCT0 537 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 ZNF473Q8WTR7 871 aaKnown RBP15.19■□□□□ 0.02
SYNE3-201ENST00000334258 NOX5Q96PH1 765 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 CCT8L2Q96SF2 557 aa15.19■□□□□ 0.02
SYNE3-201ENST00000334258 MROH5Q6ZUA9 1318 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 CCNE1P24864 410 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 NBPF20Q3BBV1 942 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 NAALADL2Q58DX5 795 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 FAM47AQ5JRC9 791 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 CEP85LQ5SZL2 805 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 TANGO6Q9C0B7 1094 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 QTRT2Q9H974 415 aaKnown RBP15.18■□□□□ 0.02
SYNE3-201ENST00000334258 ATP2C2O75185 946 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 ITIH3Q06033 890 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 KCNB1Q14721 858 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 ENOX2Q16206 610 aaKnown RBP15.18■□□□□ 0.02
SYNE3-201ENST00000334258 ODF2Q5BJF6 829 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 BARGINQ6ZT62 677 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 BLIDQ8IZY5 108 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 CAVIN3Q969G5 261 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 GJD4Q96KN9 370 aaPredicted RBP15.18■□□□□ 0.02
SYNE3-201ENST00000334258 ZNF233A6NK53 670 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 RHOBTB3O94955 611 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 PRLRP16471 622 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 HDLBPQ00341 1268 aaKnown RBP15.18■□□□□ 0.02
SYNE3-201ENST00000334258 STK4Q13043 487 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 CCDC40Q4G0X9 1142 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 NLRP14Q86W24 1093 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 HPS3Q969F9 1004 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 KRT12Q99456 494 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 PLAGL2Q9UPG8 496 aa15.18■□□□□ 0.02
SYNE3-201ENST00000334258 MYH14Q7Z406 1995 aaKnown RBP15.17■□□□□ 0.02
SYNE3-201ENST00000334258 GOLGA6L7A0A1B0GV03 622 aa15.17■□□□□ 0.02
SYNE3-201ENST00000334258 KIF1CO43896 1103 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms