RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 C7orf61Q8IZ16 206 aa18.3■□□□□ 0.52
CLN3-201ENST00000333496 SAMD3Q8N6K7 520 aa18.3■□□□□ 0.52
CLN3-201ENST00000333496 NSUN6Q8TEA1 469 aaKnown RBP18.3■□□□□ 0.52
CLN3-201ENST00000333496 PXMP2Q9NR77 195 aa18.3■□□□□ 0.52
CLN3-201ENST00000333496 RBM28Q9NW13 759 aaKnown RBP18.3■□□□□ 0.52
CLN3-201ENST00000333496 NR2E3Q9Y5X4 410 aa18.3■□□□□ 0.52
CLN3-201ENST00000333496 CNTNAP5Q8WYK1 1306 aa18.29■□□□□ 0.52
CLN3-201ENST00000333496 RANBP2P49792 3224 aaKnown RBP18.29■□□□□ 0.52
CLN3-201ENST00000333496 RCAN1P53805 252 aa18.29■□□□□ 0.52
CLN3-201ENST00000333496 FGD1P98174 961 aa18.29■□□□□ 0.52
CLN3-201ENST00000333496 KCNA10Q16322 511 aa18.29■□□□□ 0.52
CLN3-201ENST00000333496 IWS1Q96ST2 819 aa18.29■□□□□ 0.52
CLN3-201ENST00000333496 MPHOSPH6Q99547 160 aaKnown RBP18.29■□□□□ 0.52
CLN3-201ENST00000333496 TSEN34Q9BSV6 310 aaKnown RBP18.29■□□□□ 0.52
CLN3-201ENST00000333496 SEC63Q9UGP8 760 aaKnown RBP18.29■□□□□ 0.52
CLN3-201ENST00000333496 A0A1W2PQ45 241 aaPredicted RBP18.28■□□□□ 0.52
CLN3-201ENST00000333496 A0A1W2PQY0 241 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 GOLGA8AA7E2F4 631 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 GOLGA8BA8MQT2 603 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 EIF2AK2P19525 551 aaKnown RBP18.28■□□□□ 0.52
CLN3-201ENST00000333496 ACLYP53396 1101 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 SNX17Q15036 470 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 DUSP28Q4G0W2 176 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 NOL8Q76FK4 1167 aaKnown RBP18.28■□□□□ 0.52
CLN3-201ENST00000333496 TLK2Q86UE8 772 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 WDR11Q9BZH6 1224 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 TM6SF1Q9BZW5 370 aa18.28■□□□□ 0.52
CLN3-201ENST00000333496 B4DLN1 442 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 GCOM1H8Y6P7 765 aaPredicted RBP18.27■□□□□ 0.52
CLN3-201ENST00000333496 DYNC1LI2O43237 492 aaPredicted RBP18.27■□□□□ 0.52
CLN3-201ENST00000333496 SEC24BO95487 1268 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 POLR2MP0CAP2 368 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 ADD1P35611 737 aaKnown RBP18.27■□□□□ 0.52
CLN3-201ENST00000333496 MRPL12P52815 198 aaKnown RBP18.27■□□□□ 0.52
CLN3-201ENST00000333496 BEX3Q00994 111 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 TOB2Q14106 344 aaPredicted RBP18.27■□□□□ 0.52
CLN3-201ENST00000333496 GNASQ5JWF2 1037 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 ARHGEF16Q5VV41 709 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 SPC25Q9HBM1 224 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 PCDH10Q9P2E7 1040 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 Q9Y3F1 56 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 NID2Q14112 1375 aa18.27■□□□□ 0.52
CLN3-201ENST00000333496 MOXD2PA6NHM9 499 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 ASGR1P07306 291 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 NR3C2P08235 984 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 EVCP57679 992 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 RTP1P59025 263 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 STXBP2Q15833 593 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 FCHSD1Q86WN1 690 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 PDCD2LQ9BRP1 358 aa18.27■□□□□ 0.51
CLN3-201ENST00000333496 UPF3BQ9BZI7 483 aaKnown RBP18.27■□□□□ 0.51
CLN3-201ENST00000333496 NAP1L2Q9ULW6 460 aaPredicted RBP18.27■□□□□ 0.51
CLN3-201ENST00000333496 MEIS2O14770 477 aa18.26■□□□□ 0.51
CLN3-201ENST00000333496 ARIH2O95376 493 aa18.26■□□□□ 0.51
CLN3-201ENST00000333496 METAP2P50579 478 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLN3-201ENST00000333496 C1orf53Q5VUE5 145 aa18.26■□□□□ 0.51
CLN3-201ENST00000333496 PCSK9Q8NBP7 692 aaKnown RBP18.26■□□□□ 0.51
CLN3-201ENST00000333496 IL31RAQ8NI17 732 aa18.26■□□□□ 0.51
CLN3-201ENST00000333496 SCFD2Q8WU76 684 aa18.26■□□□□ 0.51
CLN3-201ENST00000333496 ZMYND8Q9ULU4 1186 aaPredicted RBP18.26■□□□□ 0.51
CLN3-201ENST00000333496 CYP46A1Q9Y6A2 500 aa18.26■□□□□ 0.51
CLN3-201ENST00000333496 DOCK5Q9H7D0 1870 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 SYN1P17600 705 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 PGM5Q15124 567 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 PPP2R5BQ15173 497 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 CCDC62Q6P9F0 684 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 USP17L6PQ6QN14 398 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 COPS5Q92905 334 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 GPKOWQ92917 476 aaPredicted RBP eCLIP18.25■□□□□ 0.51
CLN3-201ENST00000333496 AP5M1Q9H0R1 490 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 V9GY48 417 aaPredicted RBP18.25■□□□□ 0.51
CLN3-201ENST00000333496 LTBP2Q14767 1821 aa18.25■□□□□ 0.51
CLN3-201ENST00000333496 PIK3CDO00329 1044 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 RGS20O76081 388 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 FSCN1Q16658 493 aaKnown RBP18.24■□□□□ 0.51
CLN3-201ENST00000333496 TRIM60Q495X7 471 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 TYW1BQ6NUM6 668 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 SEPT14Q6ZU15 432 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 STARD7Q9NQZ5 370 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 ATP11BQ9Y2G3 1177 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 FRMPD4Q14CM0 1322 aa18.24■□□□□ 0.51
CLN3-201ENST00000333496 EIF3JO75822 258 aaKnown RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 TXNP10599 105 aaKnown RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 MYCLP12524 364 aaPredicted RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 PDIA3P30101 505 aaKnown RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 TTLL4Q14679 1199 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 WWC2Q6AWC2 1192 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 HEATR3Q7Z4Q2 680 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 VSIG10LQ86VR7 867 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 ZFP91Q96JP5 570 aaPredicted RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 LARP6Q9BRS8 491 aaKnown RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 COLQQ9Y215 455 aaPredicted RBP18.23■□□□□ 0.51
CLN3-201ENST00000333496 NKRFO15226 690 aaKnown RBP eCLIP18.23■□□□□ 0.51
CLN3-201ENST00000333496 ANAPC15P60006 121 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 NTRK3Q16288 839 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 IL17RAQ96F46 866 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 GLT1D1Q96MS3 346 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 PRO3102Q9H379 93 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 PSTPIP2Q9H939 334 aa18.23■□□□□ 0.51
CLN3-201ENST00000333496 SCN10AQ9Y5Y9 1956 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms