RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DDX20Q9UHI6 824 aaKnown RBP18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 B4DLN1 442 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 SEPT4O43236 478 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 SGPL1O95470 568 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 GJA8P48165 433 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 MRPL12P52815 198 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 ANO1Q5XXA6 986 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 FBXO16Q8IX29 292 aaPredicted RBP18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 MORC4Q8TE76 937 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 PXMP2Q9NR77 195 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 BRCA2P51587 3418 aa18.28■□□□□ 0.52
CCDC28A-201ENST00000332797 MEIS2O14770 477 aa18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 DTNBO60941 627 aa18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 TFRCP02786 760 aaKnown RBP18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 ADCY7P51828 1080 aa18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 UBE2SQ16763 222 aa18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 SHISA4Q96DD7 197 aa18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 KATNBL1Q9H079 304 aa18.27■□□□□ 0.52
CCDC28A-201ENST00000332797 FRMPD3Q5JV73 1810 aa18.27■□□□□ 0.51
CCDC28A-201ENST00000332797 SMCO2A6NFE2 343 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 PIK3CDO00329 1044 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 MSCO60682 206 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 DEXIO95424 95 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 AKR1A1P14550 325 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 EDNRBP24530 442 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 LHX8Q68G74 356 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 CCDC12Q8WUD4 166 aaPredicted RBP18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 VTA1Q9NP79 307 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 RIC8AQ9NPQ8 531 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 FAM184BQ9ULE4 1060 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 CTDNEP1O95476 244 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 CCDC144BQ3MJ40 725 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 LENG1Q96BZ8 264 aaPredicted RBP18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 ZSCAN31Q96LW9 406 aaPredicted RBP18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 IWS1Q96ST2 819 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 PDCD2LQ9BRP1 358 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 CRISPLD2Q9H0B8 497 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 VPS54Q9P1Q0 977 aa18.26■□□□□ 0.51
CCDC28A-201ENST00000332797 STK36Q9NRP7 1315 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 KIAA0100Q14667 2235 aaKnown RBP18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 NR3C2P08235 984 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 RARBP10826 455 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 MYCLP12524 364 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 ST3GAL1Q11201 340 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 PGM5Q15124 567 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 CCDC83Q8IWF9 413 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 CCDC148Q8NFR7 591 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 IL31RAQ8NI17 732 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 PDGFCQ9NRA1 345 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 SH2B1Q9NRF2 756 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 OGDHLQ9ULD0 1010 aa18.25■□□□□ 0.51
CCDC28A-201ENST00000332797 SPDYE3A6NKU9 549 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 ADCYAP1R1P41586 468 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 STXBP2Q15833 593 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 IFFO2Q5TF58 517 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 TAPT1Q6NXT6 567 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 NSUN7Q8NE18 718 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 IL27Q8NEV9 243 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 AIFM3Q96NN9 605 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 GLT8D2Q9H1C3 349 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 C6orf50Q9HD87 102 aa18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 ORC3Q9UBD5 711 aaPredicted RBP18.24■□□□□ 0.51
CCDC28A-201ENST00000332797 FRMPD4Q14CM0 1322 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 ESYT2A0FGR8 921 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 ADCY6O43306 1168 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 CD2BP2O95400 341 aaKnown RBP18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 CCND2P30279 289 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 TNFAIP2Q03169 654 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 ZMYND12Q9H0C1 365 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 XPNPEP3Q9NQH7 507 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 SH3GLB2Q9NR46 395 aa18.23■□□□□ 0.51
CCDC28A-201ENST00000332797 JAK2O60674 1132 aa18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 MYCNP04198 464 aaPredicted RBP18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 NLRP5P59047 1200 aa18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 PGBD1Q96JS3 809 aa18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 TMEM260Q9NX78 707 aa18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 PCDHA6Q9UN73 950 aa18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 PCDHA8Q9Y5H6 950 aa18.22■□□□□ 0.51
CCDC28A-201ENST00000332797 EIF3JO75822 258 aaKnown RBP18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 FARP2O94887 1054 aaPredicted RBP18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 CAPN2P17655 700 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 GNA11P29992 359 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 IQSEC1Q6DN90 963 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 SEPT14Q6ZU15 432 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 VSIG10LQ86VR7 867 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 TEX2Q8IWB9 1127 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 ZFP91Q96JP5 570 aaPredicted RBP18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 WDR11Q9BZH6 1224 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 EHMT1Q9H9B1 1298 aa18.21■□□□□ 0.51
CCDC28A-201ENST00000332797 DUSP11O75319 330 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 PGK1P00558 417 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 SMPD1P17405 629 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 MCM2P49736 904 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 AP3B2Q13367 1082 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 TMEM63BQ5T3F8 832 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 JAKMIP3Q5VZ66 844 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 REXO1Q8N1G1 1221 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 ANKLE1Q8NAG6 615 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 BICD2Q8TD16 824 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms