RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PGK1P00558 417 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 HOXA13P31271 388 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-201ENST00000332345 AKAP17AQ02040 695 aaKnown RBP16.15■□□□□ 0.18
LIMS1-201ENST00000332345 FUT2Q10981 343 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 HEATR3Q7Z4Q2 680 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 FBXO16Q8IX29 292 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-201ENST00000332345 SENP6Q9GZR1 1112 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-201ENST00000332345 PSTPIP2Q9H939 334 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 PXMP2Q9NR77 195 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 COL20A1Q9P218 1284 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 RBM27Q9P2N5 1060 aaKnown RBP16.15■□□□□ 0.18
LIMS1-201ENST00000332345 DDX49Q9Y6V7 483 aaKnown RBP16.15■□□□□ 0.18
LIMS1-201ENST00000332345 CNTNAP5Q8WYK1 1306 aa16.15■□□□□ 0.18
LIMS1-201ENST00000332345 TNRC18O15417 2968 aaPredicted RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 RBM47A0AV96 593 aaKnown RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 hCG_1984214I3L0E3 225 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 EIF3JO75822 258 aaKnown RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 COL6A1P12109 1028 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 EIF2AK2P19525 551 aaKnown RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 ADCYAP1R1P41586 468 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 CCT2P78371 535 aaKnown RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 FCHSD1Q86WN1 690 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 ZNF713Q8N859 430 aaPredicted RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 SMARCC2Q8TAQ2 1214 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 TSEN34Q9BSV6 310 aaKnown RBP16.14■□□□□ 0.17
LIMS1-201ENST00000332345 WDR11Q9BZH6 1224 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 AP5M1Q9H0R1 490 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 PDGFCQ9NRA1 345 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 Q9Y3F1 56 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 GTF3C3Q9Y5Q9 886 aa16.14■□□□□ 0.17
LIMS1-201ENST00000332345 NID2Q14112 1375 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 PIK3CDO00329 1044 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 NR3C2P08235 984 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 C6orf222P0C671 652 aaPredicted RBP16.13■□□□□ 0.17
LIMS1-201ENST00000332345 GJA9P57773 515 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 CPLX2Q6PUV4 134 aaKnown RBP16.13■□□□□ 0.17
LIMS1-201ENST00000332345 TEX2Q8IWB9 1127 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 PCSK9Q8NBP7 692 aaKnown RBP16.13■□□□□ 0.17
LIMS1-201ENST00000332345 SCFD2Q8WU76 684 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 NR2E3Q9Y5X4 410 aa16.13■□□□□ 0.17
LIMS1-201ENST00000332345 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 CPLX1O14810 134 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 NKRFO15226 690 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 DYNC1LI2O43237 492 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 PRPF3O43395 683 aaKnown RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 EVI5O60447 810 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 ADAMTS4O75173 837 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 MYCLP12524 364 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 IFNAR1P17181 557 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 SMPD1P17405 629 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 NAPAP54920 295 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 TTLL4Q14679 1199 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 DUSP28Q4G0W2 176 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 GNASQ5JWF2 1037 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 KLHDC9Q8NEP7 349 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 LENG1Q96BZ8 264 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 PDCD2LQ9BRP1 358 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 LARP6Q9BRS8 491 aaKnown RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 GLT8D2Q9H1C3 349 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 UPF3AQ9H1J1 476 aaKnown RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 GNEQ9Y223 722 aaKnown RBP16.12■□□□□ 0.17
LIMS1-201ENST00000332345 SYNRGQ9UMZ2 1314 aa16.12■□□□□ 0.17
LIMS1-201ENST00000332345 MOXD2PA6NHM9 499 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 MEIS2O14770 477 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 ADCY6O43306 1168 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 ZEB2O60315 1214 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 CST5P28325 142 aaPredicted RBP16.11■□□□□ 0.17
LIMS1-201ENST00000332345 CCND2P30279 289 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 NEK4P51957 841 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 NKX3-2P78367 333 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 PGM5Q15124 567 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 KCNA10Q16322 511 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 PFKFB3Q16875 520 aaPredicted RBP16.11■□□□□ 0.17
LIMS1-201ENST00000332345 WWC2Q6AWC2 1192 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 PPP1R18Q6NYC8 613 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 USP17L6PQ6QN14 398 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 TLK2Q86UE8 772 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 VSIG10LQ86VR7 867 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 TRIM22Q8IYM9 498 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 GPKOWQ92917 476 aaPredicted RBP eCLIP16.11■□□□□ 0.17
LIMS1-201ENST00000332345 RNF26Q9BY78 433 aaPredicted RBP16.11■□□□□ 0.17
LIMS1-201ENST00000332345 RNF39Q9H2S5 420 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 UPF2Q9HAU5 1272 aaKnown RBP16.11■□□□□ 0.17
LIMS1-201ENST00000332345 NCOA5Q9HCD5 579 aaKnown RBP16.11■□□□□ 0.17
LIMS1-201ENST00000332345 BARHL2Q9NY43 387 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 PHF24Q9UPV7 400 aa16.11■□□□□ 0.17
LIMS1-201ENST00000332345 TXNP10599 105 aaKnown RBP16.1■□□□□ 0.17
LIMS1-201ENST00000332345 SCG2P13521 617 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 SSRP1Q08945 709 aaKnown RBP16.1■□□□□ 0.17
LIMS1-201ENST00000332345 STK3Q13188 491 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 NTRK3Q16288 839 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 KCNV1Q6PIU1 500 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 SEPT14Q6ZU15 432 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 CCDC12Q8WUD4 166 aaPredicted RBP16.1■□□□□ 0.17
LIMS1-201ENST00000332345 PHKBQ93100 1093 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 SLC26A6Q9BXS9 759 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 C22orf23Q9BZE7 217 aa16.1■□□□□ 0.17
LIMS1-201ENST00000332345 SLKQ9H2G2 1235 aaPredicted RBP16.1■□□□□ 0.17
LIMS1-201ENST00000332345 KIAA1217Q5T5P2 1943 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 SMCO2A6NFE2 343 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms