RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 THAP9Q9H5L6 903 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 PCDHA13Q9Y5I0 950 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 ZBTB17Q13105 803 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 TEKT1Q969V4 418 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 KAT6BQ8WYB5 2073 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 TTC37Q6PGP7 1564 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 K7ENM7 598 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 ECEL1O95672 775 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 P4HA1P13674 534 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 YWHAGP61981 247 aaKnown RBP eCLIP18.88■□□□□ 0.61
SYNPO-201ENST00000307662 SLC7A5Q01650 507 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 KMT5BQ4FZB7 885 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 CCDC117Q8IWD4 279 aaPredicted RBP18.88■□□□□ 0.61
SYNPO-201ENST00000307662 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.88■□□□□ 0.61
SYNPO-201ENST00000307662 MORC2Q9Y6X9 1032 aaPredicted RBP18.88■□□□□ 0.61
SYNPO-201ENST00000307662 PPFIA2O75334 1257 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 MYL1P05976 194 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 ATP1A3P13637 1013 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 UBE3CQ15386 1083 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 LRRC23Q53EV4 343 aaPredicted RBP18.88■□□□□ 0.61
SYNPO-201ENST00000307662 AK8Q96MA6 479 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 MFAP3LO75121 409 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 HSPA6P17066 643 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 EIF4A3P38919 411 aaKnown RBP18.88■□□□□ 0.61
SYNPO-201ENST00000307662 KAZNQ674X7 775 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 COPRSQ9NQ92 184 aa18.88■□□□□ 0.61
SYNPO-201ENST00000307662 KLRF2D3W0D1 207 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 KRT3P12035 628 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 NSFP46459 744 aaKnown RBP18.87■□□□□ 0.61
SYNPO-201ENST00000307662 CTSWP56202 376 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 ADCY1Q08828 1119 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 CUL1Q13616 776 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 TMED2Q15363 201 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 SDR42E1Q8WUS8 393 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 ZFYVE16Q7Z3T8 1539 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 CLASP1Q7Z460 1538 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 ABCA8O94911 1581 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 OTUD6AQ7L8S5 288 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 NSMCE1Q8WV22 266 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 LARP4BQ92615 738 aaKnown RBP18.87■□□□□ 0.61
SYNPO-201ENST00000307662 CCNL1Q9UK58 526 aaPredicted RBP18.87■□□□□ 0.61
SYNPO-201ENST00000307662 GARSP41250 739 aaKnown RBP18.87■□□□□ 0.61
SYNPO-201ENST00000307662 MYL7Q01449 175 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 TCP11X2Q5H9J9 407 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 C10orf76Q5T2E6 689 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 LRGUKQ96M69 825 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 ST7Q9NRC1 585 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 RASGRF2O14827 1237 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 PLA2G4DQ86XP0 818 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 PCP11498 1178 aaKnown RBP18.87■□□□□ 0.61
SYNPO-201ENST00000307662 SCYL1Q96KG9 808 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 DBNLQ9UJU6 430 aaKnown RBP18.87■□□□□ 0.61
SYNPO-201ENST00000307662 ANGPTL2Q9UKU9 493 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 TTLL3Q9Y4R7 772 aa18.87■□□□□ 0.61
SYNPO-201ENST00000307662 ATP7BP35670 1465 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 ANKRD65E5RJM6 399 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 AFPP02771 609 aaKnown RBP18.86■□□□□ 0.61
SYNPO-201ENST00000307662 CA8P35219 290 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 ASPHQ12797 758 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 FAM102BQ5T8I3 360 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 CDKL2Q92772 493 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 HAUS8Q9BT25 410 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 SUDS3Q9H7L9 328 aaPredicted RBP18.86■□□□□ 0.61
SYNPO-201ENST00000307662 MMP1P03956 469 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 SLCO1A2P46721 670 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 TAF12Q16514 161 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 MMEL1Q495T6 779 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 TBC1D1Q86TI0 1168 aaPredicted RBP18.86■□□□□ 0.61
SYNPO-201ENST00000307662 PDZD8Q8NEN9 1154 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 VTI1AQ96AJ9 217 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 MYO1FO00160 1098 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 SGO2Q562F6 1265 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 TLR7Q9NYK1 1049 aaKnown RBP18.86■□□□□ 0.61
SYNPO-201ENST00000307662 ANAPC5Q9UJX4 755 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 NR2F2P24468 414 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 PDCLQ13371 301 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 ZYXQ15942 572 aaKnown RBP18.86■□□□□ 0.61
SYNPO-201ENST00000307662 SCYL2Q6P3W7 929 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 TOGARAM2Q6ZUX3 1019 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 FMO2Q99518 471 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 CARD10Q9BWT7 1032 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 NFU1Q9UMS0 254 aa18.86■□□□□ 0.61
SYNPO-201ENST00000307662 MX2P20592 715 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 CNGA1P29973 690 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 GLE1Q53GS7 698 aaKnown RBP18.85■□□□□ 0.61
SYNPO-201ENST00000307662 GJA10Q969M2 543 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 SDCCAG3Q96C92 435 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 TSC22D3Q99576 134 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 SAMD9LQ8IVG5 1584 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 TARBP1Q13395 1621 aaKnown RBP18.85■□□□□ 0.61
SYNPO-201ENST00000307662 LRRC24Q50LG9 513 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 C6orf118Q5T5N4 469 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 TAB3Q8N5C8 712 aaPredicted RBP18.85■□□□□ 0.61
SYNPO-201ENST00000307662 ZMYND12Q9H0C1 365 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 IFT122Q9HBG6 1241 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 GOLGA8QA0A0J9YX86 632 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 GOLGA8OA6NCC3 632 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 GOLGA8NF8WBI6 632 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 SERPING1P05155 500 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 KIF11P52732 1056 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms