RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 AKR1B1P15121 316 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 EVX2Q03828 476 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 NAIF1Q69YI7 327 aaPredicted RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 DGKHQ86XP1 1220 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 SLF1Q9BQI6 1058 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 MRPL44Q9H9J2 332 aaKnown RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 SPATS2LQ9NUQ6 558 aaKnown RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 ENTPD3O75355 529 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 DEXIO95424 95 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 YEATS4O95619 227 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 GH2P01242 217 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 IRAK1P51617 712 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 ENGASEQ8NFI3 743 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 HOOK2Q96ED9 719 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 CEP95Q96GE4 821 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 ALDH8A1Q9H2A2 487 aaPredicted RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 PICK1Q9NRD5 415 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 TNS1Q9HBL0 1735 aaKnown RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 DDAH1O94760 285 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 DDNO94850 711 aaPredicted RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 TTLL1O95922 423 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 RASA1P20936 1047 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 IFT88Q13099 833 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 DCAF15Q66K64 600 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 C16orf86Q6ZW13 317 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 GSPT2Q8IYD1 628 aaKnown RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 SMARCC2Q8TAQ2 1214 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 TMEM39BQ9GZU3 492 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 RTEL1Q9NZ71 1219 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 FRMPD2Q68DX3 1309 aaPredicted RBP12.1□□□□□ -0.47
LSM3-201ENST00000306024 CPP00450 1065 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 PDCLQ13371 301 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 SNCBQ16143 134 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 CLEC10AQ8IUN9 316 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 CEP120Q8N960 986 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 LINC00301Q8NCQ3 95 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 NEDD1Q8NHV4 660 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 RRP36Q96EU6 259 aaKnown RBP12.09□□□□□ -0.47
LSM3-201ENST00000306024 NBPF3Q9H094 633 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 KANSL2Q9H9L4 492 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 COL24A1Q17RW2 1714 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 KLRF2D3W0D1 207 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 ENC1O14682 589 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 KCTD16Q68DU8 428 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 SGMS1Q86VZ5 419 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 CNGA4Q8IV77 575 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 TMEM47Q9BQJ4 181 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 ZNHIT6Q9NWK9 470 aaKnown RBP12.09□□□□□ -0.47
LSM3-201ENST00000306024 DDTLA6NHG4 134 aaPredicted RBP12.09□□□□□ -0.47
LSM3-201ENST00000306024 MAP2K1Q02750 393 aaPredicted RBP12.09□□□□□ -0.47
LSM3-201ENST00000306024 SEPT2Q15019 361 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 MYSM1Q5VVJ2 828 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 MAATS1Q7Z4T9 603 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 ZFPM1Q8IX07 1006 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 NOA1Q8NC60 698 aaKnown RBP12.09□□□□□ -0.47
LSM3-201ENST00000306024 ACRBPQ8NEB7 543 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 FAM151AQ8WW52 585 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 KAT2BQ92831 832 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 IL17RAQ96F46 866 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 MTA3Q9BTC8 594 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 UBA5Q9GZZ9 404 aa12.09□□□□□ -0.47
LSM3-201ENST00000306024 SLX4Q8IY92 1834 aa12.08□□□□□ -0.47
LSM3-201ENST00000306024 WNT10BO00744 389 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 NAPAP54920 295 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 GSCP56915 257 aaPredicted RBP12.08□□□□□ -0.48
LSM3-201ENST00000306024 SPECC1Q5M775 1068 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 USP17L2Q6R6M4 530 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 BRAPQ7Z569 592 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 SH2D4AQ9H788 454 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 IRS2Q9Y4H2 1338 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 LRP5O75197 1615 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 ERCC3P19447 782 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 CCDC40Q4G0X9 1142 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 ANGEL2Q5VTE6 544 aaKnown RBP12.08□□□□□ -0.48
LSM3-201ENST00000306024 PRAMEF18Q5VWM3 479 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 TACO1Q9BSH4 297 aaKnown RBP12.08□□□□□ -0.48
LSM3-201ENST00000306024 MRIQ9BWK5 157 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 BAIAP2L1Q9UHR4 511 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 PCDHA5Q9Y5H7 936 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 CCDC194A0A1B0GVG4 234 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 TFRCP02786 760 aaKnown RBP12.08□□□□□ -0.48
LSM3-201ENST00000306024 PAX7P23759 505 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 CMA1P23946 247 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 CCDC122Q5T0U0 273 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 KRT40Q6A162 431 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 SPICE1Q8N0Z3 855 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 MSANTD4Q8NCY6 345 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 MICAL1Q8TDZ2 1067 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 CLIC6Q96NY7 704 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 VPS54Q9P1Q0 977 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 KCNJ14Q9UNX9 436 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 COL4A1P02462 1669 aa12.08□□□□□ -0.48
LSM3-201ENST00000306024 CDC27P30260 824 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 CCT6AP40227 531 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 NT5C2P49902 561 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 SLFN13Q68D06 897 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 TMEM179Q6ZVK1 233 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 SPATS2Q86XZ4 545 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 CCDC50Q8IVM0 306 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 KLC4Q9NSK0 619 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms