RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ARPP21Q9UBL0 812 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 FRMD4BQ9Y2L6 1034 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CAPN7Q9Y6W3 813 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 EYA2O00167 538 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 MAP3K7O43318 606 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ZPR1O75312 459 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 AGTP01019 485 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ZSCAN20P17040 1043 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 USP14P54578 494 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 KRT71Q3SY84 523 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 POTEAQ6S8J7 498 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 Q6ZUG5 572 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SLFN12Q8IYM2 578 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CXorf38Q8TB03 319 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 MMADHCQ9H3L0 296 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 POLKQ9UBT6 870 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PPP1R9AQ9ULJ8 1098 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 MRFAP1Q9Y605 127 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PVALEFA0A1B0GWK0 134 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 NR1D1P20393 614 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 IL13P35225 146 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SERPINB8P50452 374 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 NAA20P61599 178 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 TAF11Q15544 211 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PDZD4Q76G19 769 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 MMGT1Q8N4V1 131 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 DTX3LQ8TDB6 740 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CSRNP1Q96S65 589 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CARD6Q9BX69 1037 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 XPO4Q9C0E2 1151 aaKnown RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 C10orf88Q9H8K7 445 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ATP6V0A4Q9HBG4 840 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ANGPTL3Q9Y5C1 460 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CHGBP05060 677 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SMARCA1P28370 1054 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 GNL1P36915 607 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CABP4P57796 275 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 DIP2AQ14689 1571 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ANKRD13DQ6ZTN6 518 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CDV3Q9UKY7 258 aaKnown RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SORCS3Q9UPU3 1222 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 LMOD1P29536 600 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 MUM1Q2TAK8 710 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 TRMT10CQ7L0Y3 403 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PCGF5Q86SE9 256 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 LCA5Q86VQ0 697 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 FAM204AQ9H8W3 233 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 SCHIP1Q9P0W5 487 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 EMILIN1Q9Y6C2 1016 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PFDN6O15212 129 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 SKIV2L2P42285 1042 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 GNGT1P63211 74 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 MAN2A1Q16706 1144 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 BRDTQ58F21 947 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 METTL24Q5JXM2 366 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 OGFOD1Q8N543 542 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PLBD2Q8NHP8 589 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 RIN3Q8TB24 985 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 CACTINQ8WUQ7 758 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 NYXQ9GZU5 481 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 TRMT1Q9NXH9 659 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 KCND2Q9NZV8 630 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 DENND2AQ9ULE3 1009 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ADGRF5Q8IZF2 1346 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PSMD6Q15008 389 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 TTC13Q8NBP0 860 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF512BQ96KM6 892 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 TIPINQ9BVW5 301 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 NLRP2Q9NX02 1062 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PACSIN2Q9UNF0 486 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 E9PMD0 336 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 NOP14P78316 857 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 METTL22Q9BUU2 404 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PPANQ9NQ55 473 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 AIPL1Q9NZN9 384 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 RAB21Q9UL25 225 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 AGLP35573 1532 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ZCCHC11Q5TAX3 1644 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 FAM107AO95990 144 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 EEF2P13639 858 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ASIC1P78348 528 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 RPS6KA2Q15349 733 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ATG16L1Q676U5 607 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 PALB2Q86YC2 1186 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF483Q8TF39 744 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 DDI1Q8WTU0 396 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 RBM42Q9BTD8 480 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 NOC4LQ9BVI4 516 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 YIPF3Q9GZM5 350 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 STXBP3O00186 592 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 STRNO43815 780 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 U2AF2P26368 475 aaKnown RBP eCLIP5.69□□□□□ -1.51e-6■■■□□ 14.9
SCN1A-201ENST00000303395 INAQ16352 499 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 DNAL1Q4LDG9 190 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 NCAPH2Q6IBW4 605 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 ENOSF1Q7L5Y1 443 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 SYTL2Q9HCH5 934 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 DDX25Q9UHL0 483 aaKnown RBP5.69□□□□□ -1.5
SCN1A-201ENST00000303395 NOD1Q9Y239 953 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms