RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 BAIAP3O94812 1187 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 FGAP02671 866 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 PDHBP11177 359 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 MYOGP15173 224 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 NT5C2P49902 561 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 RPS6P62753 249 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 MCMDC2Q4G0Z9 681 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 GPATCH4Q5T3I0 446 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 VPS53Q5VIR6 699 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 SLC30A10Q6XR72 485 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 RGS22Q8NE09 1264 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 CLEC4DQ8WXI8 215 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 COG5Q9UP83 839 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 NOD1Q9Y239 953 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 PCDHB15Q9Y5E8 787 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 FRMPD2Q68DX3 1309 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 SALL3Q9BXA9 1300 aa17.36■□□□□ 0.37
CCDC88B-201ENST00000301897 TANC1Q9C0D5 1861 aa17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 CA3P07451 260 aa17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 IQCF3P0C7M6 154 aa17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 TXNP10599 105 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 ZNF543Q08ER8 600 aa17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 SKIV2LQ15477 1246 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 CAGE1Q8TC20 777 aa17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 C1QTNF1Q9BXJ1 281 aa17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 FTOQ9C0B1 505 aaKnown RBP eCLIP17.35■□□□□ 0.37
CCDC88B-201ENST00000301897 PARNO95453 639 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 SNHG28P0DPA3 235 aa17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 BMP1P13497 986 aa17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 MFSD6Q6ZSS7 791 aa17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 RNF41Q9H4P4 317 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 TCF20Q9UGU0 1960 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 MTCH2Q9Y6C9 303 aa17.34■□□□□ 0.37
CCDC88B-201ENST00000301897 KCNJ6P48051 423 aa17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 MFAP1P55081 439 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 CCDC178Q5BJE1 867 aa17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 ANKRD45Q5TZF3 282 aa17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 HERC6Q8IVU3 1022 aa17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 AFAP1L1Q8TED9 768 aa17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 TET1Q8NFU7 2136 aa17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 TRIP12Q14669 1992 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-201ENST00000301897 HSPD1P10809 573 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-201ENST00000301897 PDE1AP54750 535 aa17.32■□□□□ 0.36
CCDC88B-201ENST00000301897 SESTD1Q86VW0 696 aa17.32■□□□□ 0.36
CCDC88B-201ENST00000301897 ESR2Q92731 530 aa17.32■□□□□ 0.36
CCDC88B-201ENST00000301897 BRWD1Q9NSI6 2320 aa17.32■□□□□ 0.36
CCDC88B-201ENST00000301897 ABCB11O95342 1321 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 TFF2Q03403 129 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 TAP1Q03518 808 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 PTGISQ16647 500 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 DGKHQ86XP1 1220 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 NSUN6Q8TEA1 469 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 FAM227BQ96M60 508 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 IWS1Q96ST2 819 aa17.31■□□□□ 0.36
CCDC88B-201ENST00000301897 CCDC171Q6TFL3 1326 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 A0A0D9SFI3 127 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 TLL1O43897 1013 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 GH1P01241 217 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 CASTP20810 708 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 CCDC62Q6P9F0 684 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 MCF2L2Q86YR7 1114 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 ARNTL2Q8WYA1 636 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 COPS5Q92905 334 aa17.3■□□□□ 0.36
CCDC88B-201ENST00000301897 KIAA1217Q5T5P2 1943 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 EFCAB14O75071 495 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 MMP3P08254 477 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 SELPP16109 830 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 HAND2P61296 217 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 RBL2Q08999 1139 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 STXBP2Q15833 593 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 DGKDQ16760 1214 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 USH1GQ495M9 461 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 IQCA1Q86XH1 822 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 AFG1LQ8WV93 481 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 HLA-CQ95604 372 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 KATNAL1Q9BW62 490 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 CERS4Q9HA82 394 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 LMCD1Q9NZU5 365 aa17.29■□□□□ 0.36
CCDC88B-201ENST00000301897 RFXAPO00287 272 aa17.28■□□□□ 0.36
CCDC88B-201ENST00000301897 ARIH2O95376 493 aa17.28■□□□□ 0.36
CCDC88B-201ENST00000301897 PLA2G5P39877 138 aa17.28■□□□□ 0.36
CCDC88B-201ENST00000301897 CHMP4BP1P59074 171 aa17.28■□□□□ 0.36
CCDC88B-201ENST00000301897 CNKSR3Q6P9H4 555 aa17.28■□□□□ 0.36
CCDC88B-201ENST00000301897 ZBED2Q9BTP6 218 aa17.28■□□□□ 0.36
CCDC88B-201ENST00000301897 MYH6P13533 1939 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 EPOPA6NHQ4 379 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 KCNQ1P51787 676 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 WDR5P61964 334 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 ARHGAP1Q07960 439 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 NMIQ13287 307 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 CDC37Q16543 378 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 ASPRV1Q53RT3 343 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 SEPT14Q6ZU15 432 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 LRRC8DQ7L1W4 858 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 ZNF589Q86UQ0 364 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 PNMA1Q8ND90 353 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 EMID1Q96A84 441 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 FAM122AQ96E09 287 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 NECAB3Q96P71 396 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 RMDN3Q96TC7 470 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms