RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CAB39Q9Y376 341 aaPredicted RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 SEC24DO94855 1032 aaPredicted RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 PPP1R2P41236 205 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 COPB1P53618 953 aaKnown RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 SOS1Q07889 1333 aaPredicted RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 PDE1BQ01064 536 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 CCDC144BQ3MJ40 725 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 HERC4Q5GLZ8 1057 aaPredicted RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 RASSF3Q86WH2 238 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 MCUQ8NE86 351 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 DTX3LQ8TDB6 740 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 MYH6P13533 1939 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 CAND2O75155 1236 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 LRRC37BQ96QE4 947 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 STAM2O75886 525 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 B4E1Z4 1266 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 SGK1O00141 431 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 KITP10721 976 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 AP1B1Q10567 949 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 EEF2KMTQ96G04 330 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 TGS1Q96RS0 853 aaKnown RBP12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 DEAF1O75398 565 aaPredicted RBP12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 GGT7Q9UJ14 662 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 CYP2J2P51589 502 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 ME3Q16798 604 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 ARHGAP22Q7Z5H3 698 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 BBOF1Q8ND07 529 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 SNX5Q9Y5X3 404 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 AP1G2O75843 785 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 STARD3NLO95772 234 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 ZSCAN20P17040 1043 aaPredicted RBP12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 DPCR1Q3MIW9 517 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 EMBQ6PCB8 327 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 MIGA1Q8NAN2 632 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 BFSP1Q12934 665 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 MAEAQ7L5Y9 396 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 BATF3Q9NR55 127 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 GARSP41250 739 aaKnown RBP12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 CC2D2BQ6DHV5 1058 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 CCDC103Q8IW40 242 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 NAP1L4Q99733 375 aaKnown RBP12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 KIF17Q9P2E2 1029 aa12.73□□□□□ -0.37
SHROOM3-201ENST00000296043 EXOC5O00471 708 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 EIF2B2P49770 351 aaKnown RBP12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 PLD3Q8IV08 490 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 DDX17Q92841 729 aaKnown RBP12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 PPP2R2AP63151 447 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 RARS2Q5T160 578 aaKnown RBP12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 MRGBPQ9NV56 204 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 ALDH1L1O75891 902 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 ESRRBO95718 433 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 HLA-DOAP06340 250 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 KRT40Q6A162 431 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 TRIM16O95361 564 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 KIF2BQ8N4N8 673 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 ZFYVE19Q96K21 471 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 MTMR6Q9Y217 621 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 MAGEB6P1A0A0J9YX57 407 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 SMAPO00193 183 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 CA4P22748 312 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 CORO7P57737 925 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 MDM2Q00987 491 aaPredicted RBP12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 TMC5Q6UXY8 1006 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 EPN3Q9H201 632 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 MYBL1P10243 752 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 ST13P50502 369 aaKnown RBP12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 LRWD1Q9UFC0 647 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 PDE6CP51160 858 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 RAPH1Q70E73 1250 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 HIC2Q96JB3 615 aa12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 XPO1O14980 1071 aaKnown RBP12.72□□□□□ -0.37
SHROOM3-201ENST00000296043 BACH1O14867 736 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 CRLF3Q8IUI8 442 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 NCLNQ969V3 563 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 ZNF148Q9UQR1 794 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 POLR2FP61218 127 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 ADCY2Q08462 1091 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 DNAJC9Q8WXX5 260 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 CLIC6Q96NY7 704 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 PCDHA7Q9UN72 937 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 PRR23D1E9PI22 279 aaPredicted RBP12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 ECEL1O95672 775 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 PRR23D2P0DMB1 279 aaPredicted RBP12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 VCPP55072 806 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 CUL1Q13616 776 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 KIRREL3Q8IZU9 778 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 FAM227BQ96M60 508 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 LRRIQ3A6PVS8 624 aaPredicted RBP12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 WDR47O94967 919 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 SPARCL1Q14515 664 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 SPOPLQ6IQ16 392 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 WAPLQ7Z5K2 1190 aa12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 COPG1Q9Y678 874 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-201ENST00000296043 POTEB3A0JP26 581 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 POTEBQ6S5H4 581 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 NME9Q86XW9 330 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 USP27XA6NNY8 438 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 RPN1P04843 607 aaKnown RBP12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 PARP1P09874 1014 aaKnown RBP12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 CRYMQ14894 314 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms