RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 SMCO2A6NFE2 343 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 ATP2C2O75185 946 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 CARSP49589 748 aaKnown RBP16.29■□□□□ 0.2
CCNF-201ENST00000293968 EHHADHQ08426 723 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 ZIM3Q96PE6 472 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 SEC63Q9UGP8 760 aaKnown RBP16.29■□□□□ 0.2
CCNF-201ENST00000293968 TRPM3Q9HCF6 1732 aaPredicted RBP16.29■□□□□ 0.2
CCNF-201ENST00000293968 RAPGEF1Q13905 1077 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 NONOQ15233 471 aaKnown RBP eCLIP16.29■□□□□ 0.22e-6■■■■□ 22.7
CCNF-201ENST00000293968 MMGT1Q8N4V1 131 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 PROCA1Q8NCQ7 364 aaPredicted RBP16.29■□□□□ 0.2
CCNF-201ENST00000293968 LRRC15Q8TF66 581 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 TNS2Q63HR2 1409 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 LAMB4A4D0S4 1761 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 ERFEQ4G0M1 354 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 DHX37Q8IY37 1157 aaKnown RBP16.28■□□□□ 0.2
CCNF-201ENST00000293968 TAF4BQ92750 862 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 TRAF5O00463 557 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 PARP10Q53GL7 1025 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 MIIPQ5JXC2 388 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 HAUS3Q68CZ6 603 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 GBP6Q6ZN66 633 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 SMIM5Q71RC9 77 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 TSG101Q99816 390 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 NUP188Q5SRE5 1749 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 KLRF2D3W0D1 207 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 RAD21O60216 631 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 GNAQP50148 359 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 TTMPQ5BVD1 217 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 NSUN4Q96CB9 384 aaKnown RBP16.28■□□□□ 0.2
CCNF-201ENST00000293968 SEMA6BQ9H3T3 888 aa16.28■□□□□ 0.2
CCNF-201ENST00000293968 PPANQ9NQ55 473 aaKnown RBP16.28■□□□□ 0.2
CCNF-201ENST00000293968 ZC3H4Q9UPT8 1303 aaKnown RBP16.28■□□□□ 0.2
CCNF-201ENST00000293968 SF3A3Q12874 501 aaKnown RBP eCLIP16.27■□□□□ 0.2
CCNF-201ENST00000293968 NELFCDQ8IXH7 590 aa16.27■□□□□ 0.2
CCNF-201ENST00000293968 TTYH3Q9C0H2 523 aa16.27■□□□□ 0.2
CCNF-201ENST00000293968 ARPP21Q9UBL0 812 aaPredicted RBP16.27■□□□□ 0.2
CCNF-201ENST00000293968 HIBADHP31937 336 aaKnown RBP16.27■□□□□ 0.2
CCNF-201ENST00000293968 CEP85LQ5SZL2 805 aa16.27■□□□□ 0.2
CCNF-201ENST00000293968 EMBQ6PCB8 327 aa16.27■□□□□ 0.2
CCNF-201ENST00000293968 CCSER1Q9C0I3 900 aa16.27■□□□□ 0.2
CCNF-201ENST00000293968 FAM153BP0C7A2 387 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 POLR2FP61218 127 aaKnown RBP16.27■□□□□ 0.19
CCNF-201ENST00000293968 FAM153CQ494X1 144 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 C3orf67Q6ZVT6 689 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 CCDC84Q86UT8 332 aaPredicted RBP16.27■□□□□ 0.19
CCNF-201ENST00000293968 ZNF384Q8TF68 577 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 CELF1Q92879 486 aaKnown RBP16.27■□□□□ 0.19
CCNF-201ENST00000293968 FAM153AQ9UHL3 310 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 PKD1L3Q7Z443 1732 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 PALMO75781 387 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 KCNQ4P56696 695 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 TBCKQ8TEA7 893 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 MTMR8Q96EF0 704 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 UBA5Q9GZZ9 404 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 C6orf50Q9HD87 102 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 PLAGL2Q9UPG8 496 aa16.27■□□□□ 0.19
CCNF-201ENST00000293968 COL5A2P05997 1499 aaPredicted RBP16.26■□□□□ 0.19
CCNF-201ENST00000293968 GLI3P10071 1580 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 ORC4O43929 436 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 FGFR1OPO95684 399 aaKnown RBP16.26■□□□□ 0.19
CCNF-201ENST00000293968 GLI1P08151 1106 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 PCP11498 1178 aaKnown RBP16.26■□□□□ 0.19
CCNF-201ENST00000293968 PAK2Q13177 524 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 LUC7LQ9NQ29 371 aaKnown RBP16.26■□□□□ 0.19
CCNF-201ENST00000293968 SALL4Q9UJQ4 1053 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 MINPP1Q9UNW1 487 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 ECM29Q5VYK3 1845 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 E7EVH7 732 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 SEC24CP53992 1094 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 UBE4AQ14139 1066 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 MAN2A1Q16706 1144 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 RCSD1Q6JBY9 416 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 B4GALNT4Q76KP1 1039 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 POTEDQ86YR6 584 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 MAPKAPK5Q8IW41 473 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 KIAA0895Q8NCT3 520 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 KAT2BQ92831 832 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.26■□□□□ 0.19
CCNF-201ENST00000293968 TMCO5BA8MYB1 307 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 MYL1P05976 194 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 USP8P40818 1118 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 SLC9C1Q4G0N8 1177 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 ALS2CLQ60I27 953 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 USP17L2Q6R6M4 530 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 NEK8Q86SG6 692 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 TGFBRAP1Q8WUH2 860 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 ERGIC2Q96RQ1 377 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 LSM14BQ9BX40 385 aaKnown RBP16.26■□□□□ 0.19
CCNF-201ENST00000293968 TMEM260Q9NX78 707 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 LRP6O75581 1613 aa16.26■□□□□ 0.19
CCNF-201ENST00000293968 MYO1FO00160 1098 aa16.25■□□□□ 0.19
CCNF-201ENST00000293968 GUCY2CP25092 1073 aa16.25■□□□□ 0.19
CCNF-201ENST00000293968 RNPC3Q96LT9 517 aaKnown RBP16.25■□□□□ 0.19
CCNF-201ENST00000293968 CACNB1Q02641 598 aaPredicted RBP16.25■□□□□ 0.19
CCNF-201ENST00000293968 SNX29Q8TEQ0 813 aa16.25■□□□□ 0.19
CCNF-201ENST00000293968 TBC1D5Q92609 795 aa16.25■□□□□ 0.19
CCNF-201ENST00000293968 ATP8A2Q9NTI2 1148 aa16.25■□□□□ 0.19
CCNF-201ENST00000293968 POTEMA6NI47 508 aa16.25■□□□□ 0.19
CCNF-201ENST00000293968 KRT18P05783 430 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms