RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 CROCCP2Q86T23 111 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 TRIM50Q86XT4 487 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 EEF2KMTQ96G04 330 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 FANCLQ9NW38 375 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 SETDB1Q15047 1291 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 MMP1P03956 469 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 KIF23Q02241 960 aaPredicted RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 WRNIP1Q96S55 665 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 PPANQ9NQ55 473 aaKnown RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 PARP2Q9UGN5 583 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 FBXO40Q9UH90 709 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 PDZD4Q76G19 769 aaPredicted RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 SIRT2Q8IXJ6 389 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 SH3RF3Q8TEJ3 882 aaPredicted RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 TRERF1Q96PN7 1200 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 ZNF277Q9NRM2 450 aaPredicted RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 PLEKHG2Q9H7P9 1386 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 RC3H1Q5TC82 1133 aaKnown RBP20.31■□□□□ 0.84
PCDH1-201ENST00000287008 TAOK1Q7L7X3 1001 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 ISCA1Q9BUE6 129 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 LRFN2Q9ULH4 789 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 ZHX2Q9Y6X8 837 aa20.31■□□□□ 0.84
PCDH1-201ENST00000287008 KRT81Q14533 505 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 FAM76AQ8TAV0 307 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 ZBTB9Q96C00 473 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 VPS18Q9P253 973 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 RSPH14Q9UHP6 348 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 ZSCAN20P17040 1043 aaPredicted RBP20.3■□□□□ 0.84
PCDH1-201ENST00000287008 EBAG9O00559 213 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 STAM2O75886 525 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 PIK3CAP42336 1068 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 NSFP46459 744 aaKnown RBP20.3■□□□□ 0.84
PCDH1-201ENST00000287008 TRIM28Q13263 835 aaKnown RBP20.3■□□□□ 0.84
PCDH1-201ENST00000287008 BSPRYQ5W0U4 402 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 TRIM58Q8NG06 486 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 ADCY10Q96PN6 1610 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 MTERF2Q49AM1 385 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 RAB20Q9NX57 234 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 HOXC10Q9NYD6 342 aa20.3■□□□□ 0.84
PCDH1-201ENST00000287008 ACCSQ96QU6 501 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 ZMYND15Q9H091 742 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 ABCD1P33897 745 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 FKBP3Q00688 224 aaKnown RBP20.29■□□□□ 0.84
PCDH1-201ENST00000287008 RNASELQ05823 741 aaKnown RBP20.29■□□□□ 0.84
PCDH1-201ENST00000287008 PTCH1Q13635 1447 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 SPON1Q9HCB6 807 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 DISC1Q9NRI5 854 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 ABCC12Q96J65 1359 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 FAM170AA1A519 330 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 PAK2Q13177 524 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 RNF207Q6ZRF8 634 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 RSRC2Q7L4I2 434 aaKnown RBP20.29■□□□□ 0.84
PCDH1-201ENST00000287008 CCDC121Q6ZUS5 278 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 PI4K2BQ8TCG2 481 aa20.29■□□□□ 0.84
PCDH1-201ENST00000287008 MYCP01106 439 aaPredicted RBP20.28■□□□□ 0.84
PCDH1-201ENST00000287008 CYP2E1P05181 493 aaPredicted RBP20.28■□□□□ 0.84
PCDH1-201ENST00000287008 PSAPP07602 524 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 PKP1Q13835 747 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 KIAA1841Q6NSI8 718 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 ANKRD36BP1Q96IX9 119 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 SPATA31A6Q5VVP1 1343 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 SLC12A2P55011 1212 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 UBE2SQ16763 222 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 LONRF2Q1L5Z9 754 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 RSAD2Q8WXG1 361 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 RIC8AQ9NPQ8 531 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 OATP04181 439 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 HSPA1LP34931 641 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 VPS72Q15906 364 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 FAM186BQ8IYM0 893 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 HAUS1Q96CS2 278 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 DHTKD1Q96HY7 919 aaPredicted RBP20.28■□□□□ 0.84
PCDH1-201ENST00000287008 TMEM206Q9H813 350 aa20.28■□□□□ 0.84
PCDH1-201ENST00000287008 HOXA13P31271 388 aaPredicted RBP20.27■□□□□ 0.84
PCDH1-201ENST00000287008 PSMC2P35998 433 aaKnown RBP20.27■□□□□ 0.84
PCDH1-201ENST00000287008 RUFY4Q6ZNE9 571 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 TUBGCP2Q9BSJ2 902 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 USP17L5A8MUK1 530 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 SLFN14P0C7P3 912 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 SARNPP82979 210 aaKnown RBP20.27■□□□□ 0.84
PCDH1-201ENST00000287008 CNOT6LQ96LI5 555 aaKnown RBP20.27■□□□□ 0.84
PCDH1-201ENST00000287008 USP31Q70CQ4 1352 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 GMNNO75496 209 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 HPDP32754 393 aaPredicted RBP20.27■□□□□ 0.84
PCDH1-201ENST00000287008 MFAP3P55082 362 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 APOBEC3FQ8IUX4 373 aaKnown RBP20.27■□□□□ 0.84
PCDH1-201ENST00000287008 DCAF4Q8WV16 495 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 FAM184BQ9ULE4 1060 aa20.27■□□□□ 0.84
PCDH1-201ENST00000287008 MEIS1O00470 390 aa20.27■□□□□ 0.83
PCDH1-201ENST00000287008 VIMP08670 466 aaKnown RBP20.27■□□□□ 0.83
PCDH1-201ENST00000287008 MYL7Q01449 175 aa20.27■□□□□ 0.83
PCDH1-201ENST00000287008 PPP2R5EQ16537 467 aa20.27■□□□□ 0.83
PCDH1-201ENST00000287008 NBPF11Q86T75 865 aa20.27■□□□□ 0.83
PCDH1-201ENST00000287008 CACTINQ8WUQ7 758 aaKnown RBP20.27■□□□□ 0.83
PCDH1-201ENST00000287008 CCDC94Q9BW85 323 aaPredicted RBP20.27■□□□□ 0.83
PCDH1-201ENST00000287008 ANAPC4Q9UJX5 808 aa20.27■□□□□ 0.83
PCDH1-201ENST00000287008 SAR1BQ9Y6B6 198 aa20.27■□□□□ 0.83
PCDH1-201ENST00000287008 ARHGEF37A1IGU5 675 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 NECTIN1Q15223 517 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms