RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 FBXO27Q8NI29 283 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 CYB5D2Q8WUJ1 264 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 CPLX3Q8WVH0 158 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 SYTL4Q96C24 671 aaPredicted RBP5.63□□□□□ -1.51
CD44-202ENST00000278385 ACSF2Q96CM8 615 aaPredicted RBP5.63□□□□□ -1.51
CD44-202ENST00000278385 PSMG3-AS1Q96PY0 264 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 CDC5LQ99459 802 aaKnown RBP5.63□□□□□ -1.51
CD44-202ENST00000278385 RSPH9Q9H1X1 276 aaPredicted RBP5.63□□□□□ -1.51
CD44-202ENST00000278385 PPCSQ9HAB8 311 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 PRKAG3Q9UGI9 489 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 ZC3H7BQ9UGR2 993 aaKnown RBP5.63□□□□□ -1.51
CD44-202ENST00000278385 SNX11Q9Y5W9 270 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 IQSEC2Q5JU85 1478 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 UGGT1Q9NYU2 1555 aa5.63□□□□□ -1.51
CD44-202ENST00000278385 RNF17Q9BXT8 1623 aaKnown RBP5.63□□□□□ -1.51
CD44-202ENST00000278385 STRCQ7RTU9 1775 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 KIAA1324LA8MWY0 1029 aaPredicted RBP5.62□□□□□ -1.51
CD44-202ENST00000278385 TOM1O60784 492 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 SLITRK5O94991 958 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 GARTP22102 1010 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 LTKP29376 864 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 HOXA10P31260 410 aaPredicted RBP5.62□□□□□ -1.51
CD44-202ENST00000278385 SIM2Q14190 667 aaPredicted RBP5.62□□□□□ -1.51
CD44-202ENST00000278385 TCEA2Q15560 299 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 KSR2Q6VAB6 950 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 UBE3DQ7Z6J8 389 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 SHISA5Q8N114 240 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 MFSD4AQ8N468 514 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 ASB11Q8WXH4 323 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 AS3MTQ9HBK9 375 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 PTPRHQ9HD43 1115 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 GMIPQ9P107 970 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 VAV3Q9UKW4 847 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 CEP131Q9UPN4 1083 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 PLAAQ9Y263 795 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 EFR3BQ9Y2G0 817 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 R3HCC1Q9Y3T6 440 aaKnown RBP5.62□□□□□ -1.51
CD44-202ENST00000278385 PPP2R3BQ9Y5P8 575 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 PRR36Q9H6K5 1346 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 NPHP4O75161 1426 aaPredicted RBP5.62□□□□□ -1.51
CD44-202ENST00000278385 MED14O60244 1454 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 LMTK2Q8IWU2 1503 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 SPATA31D1Q6ZQQ2 1576 aa5.62□□□□□ -1.51
CD44-202ENST00000278385 DNMT1P26358 1616 aaKnown RBP5.62□□□□□ -1.51
CD44-202ENST00000278385 TCERG1O14776 1098 aaKnown RBP5.61□□□□□ -1.51
CD44-202ENST00000278385 ATE1O95260 518 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 RASGRP1O95267 797 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 MYL3P08590 195 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 SOX9P48436 509 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 RAB27AP51159 221 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 CLCN7P51798 805 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 RNF4P78317 190 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 PRKCQQ04759 706 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 CNGB1Q14028 1251 aaPredicted RBP5.61□□□□□ -1.51
CD44-202ENST00000278385 AOC3Q16853 763 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 C2orf27AQ580R0 203 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 GET4Q7L5D6 327 aaPredicted RBP5.61□□□□□ -1.51
CD44-202ENST00000278385 SLITRK4Q8IW52 837 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 SLFN12Q8IYM2 578 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 SPICE1Q8N0Z3 855 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 LTBP4Q8N2S1 1624 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 SYNPOQ8N3V7 929 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 MYO3AQ8NEV4 1616 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 CHAC2Q8WUX2 184 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 TRIT1Q9H3H1 467 aaKnown RBP5.61□□□□□ -1.51
CD44-202ENST00000278385 EHMT1Q9H9B1 1298 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 TMEM2Q9UHN6 1383 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 TAGLN3Q9UI15 199 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 FRMD4BQ9Y2L6 1034 aa5.61□□□□□ -1.51
CD44-202ENST00000278385 ZC3H13Q5T200 1668 aaKnown RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 MROH1Q8NDA8 1641 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 PRDM15P57071 1507 aaPredicted RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 NOS1P29475 1434 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 NUP155O75694 1391 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 UPK3BL1B0FP48 263 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 UPK3BL2E5RIL1 263 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 EOMESO95936 686 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 STAT3P40763 770 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 CASP2P42575 452 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 OXCT1P55809 520 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 RASGRF1Q13972 1273 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 MSMPQ1L6U9 139 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 AXDND1Q5T1B0 1012 aaPredicted RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 ANGEL2Q5VTE6 544 aaKnown RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 CDKAL1Q5VV42 579 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 CCDC70Q6NSX1 233 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 ERAP2Q6P179 960 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 HDGFL2Q7Z4V5 671 aaPredicted RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 THNSL2Q86YJ6 484 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 CREBRFQ8IUR6 639 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 PLD6Q8N2A8 252 aaKnown RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 JMYQ8N9B5 988 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 EAF1Q96JC9 268 aaPredicted RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.6□□□□□ -1.51
CD44-202ENST00000278385 IFT122Q9HBG6 1241 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 GINM1Q9NU53 330 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 ZIM2Q9NZV7 527 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 MCM8Q9UJA3 840 aa5.6□□□□□ -1.51
CD44-202ENST00000278385 POLR3KQ9Y2Y1 108 aaPredicted RBP5.6□□□□□ -1.51
CD44-202ENST00000278385 KAT6BQ8WYB5 2073 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms