RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 CDK5RAP3Q96JB5 506 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 RANBP17Q9H2T7 1088 aaKnown RBP17.2■□□□□ 0.34
SF3B4-201ENST00000271628 SYNRGQ9UMZ2 1314 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 TNNT1P13805 278 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 ARHGAP4P98171 946 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 SYCP1Q15431 976 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 SLFN12Q8IYM2 578 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 NLGN2Q8NFZ4 835 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 CRYGNQ8WXF5 182 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 HAS1Q92839 578 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 MBOAT7Q96N66 472 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 PLIN2Q99541 437 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 FEZ1Q99689 392 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 DEFB129Q9H1M3 183 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 ATAD5Q96QE3 1844 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 CD44P16070 742 aaKnown RBP17.19■□□□□ 0.34
SF3B4-201ENST00000271628 PRELPP51888 382 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 KLHL10Q6JEL2 608 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 LPAR1Q92633 364 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 KIFC2Q96AC6 838 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 C16orf45Q96MC5 204 aaPredicted RBP17.19■□□□□ 0.34
SF3B4-201ENST00000271628 C7orf25Q9BPX7 421 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 LRRC27Q9C0I9 530 aa17.19■□□□□ 0.34
SF3B4-201ENST00000271628 TBX3O15119 743 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 SLC26A4O43511 780 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 RHOBTB3O94955 611 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 SREBF1P36956 1147 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 ZYXQ15942 572 aaKnown RBP17.18■□□□□ 0.34
SF3B4-201ENST00000271628 TPD52L1Q16890 204 aaPredicted RBP17.18■□□□□ 0.34
SF3B4-201ENST00000271628 DCAF15Q66K64 600 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 SV2BQ7L1I2 683 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 TRMT44Q8IYL2 757 aaKnown RBP17.18■□□□□ 0.34
SF3B4-201ENST00000271628 TSC1Q92574 1164 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 MED15Q96RN5 788 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 RWDD2AQ9UIY3 292 aa17.18■□□□□ 0.34
SF3B4-201ENST00000271628 MRPL11Q9Y3B7 192 aaKnown RBP17.18■□□□□ 0.34
SF3B4-201ENST00000271628 STIM1Q13586 685 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 Q4G0T1 1027 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 TMC6Q7Z403 805 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 SMYD4Q8IYR2 804 aaPredicted RBP17.17■□□□□ 0.34
SF3B4-201ENST00000271628 SNX29Q8TEQ0 813 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 CTAGE1Q96RT6 745 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 ZNF341Q9BYN7 854 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 TRIM9Q9C026 710 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 NT5C3AQ9H0P0 336 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 KCNMB3Q9NPA1 279 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 KCND1Q9NSA2 647 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 POTEMA6NI47 508 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 WDR46O15213 610 aaKnown RBP17.17■□□□□ 0.34
SF3B4-201ENST00000271628 PPP1R2P41236 205 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 PAK1Q13153 545 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 KMT5BQ4FZB7 885 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 APOBEC3FQ8IUX4 373 aaKnown RBP17.17■□□□□ 0.34
SF3B4-201ENST00000271628 CCDC150Q8NCX0 1101 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 ANKRD7Q92527 254 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 KIAA1683Q9H0B3 1180 aa17.17■□□□□ 0.34
SF3B4-201ENST00000271628 SAMSN1Q9NSI8 373 aaKnown RBP17.17■□□□□ 0.34
SF3B4-201ENST00000271628 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.17■□□□□ 0.34
SF3B4-201ENST00000271628 SCAF8Q9UPN6 1271 aaKnown RBP17.17■□□□□ 0.34
SF3B4-201ENST00000271628 KDM3AQ9Y4C1 1321 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 OPLAHO14841 1288 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 KLRC4O43908 158 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 SKILP12757 684 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 CIITAP33076 1130 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 GRB10Q13322 594 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 GPC2Q8N158 579 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 GIMAP8Q8ND71 665 aaPredicted RBP17.16■□□□□ 0.34
SF3B4-201ENST00000271628 LARP4BQ92615 738 aaKnown RBP17.16■□□□□ 0.34
SF3B4-201ENST00000271628 GLIS2Q9BZE0 524 aaPredicted RBP17.16■□□□□ 0.34
SF3B4-201ENST00000271628 SPON1Q9HCB6 807 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 STK24Q9Y6E0 443 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 ABCB11O95342 1321 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 ZNF541Q9H0D2 1346 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 NRDCO43847 1150 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 CYP3A4P08684 503 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 LMNB1P20700 586 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 HOXA7P31268 230 aaPredicted RBP17.16■□□□□ 0.34
SF3B4-201ENST00000271628 PRPF38AQ8NAV1 312 aaKnown RBP17.16■□□□□ 0.34
SF3B4-201ENST00000271628 LRRC15Q8TF66 581 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 PNMA5Q96PV4 448 aa17.16■□□□□ 0.34
SF3B4-201ENST00000271628 GCOM1H8Y6P7 765 aaPredicted RBP17.15■□□□□ 0.34
SF3B4-201ENST00000271628 POLR2MP0CAP2 368 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 PRCPP42785 496 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 STX17P56962 302 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 HYIQ5T013 277 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 CDKAL1Q5VV42 579 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 CCDC174Q6PII3 467 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 VSTM4Q8IW00 320 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 FAM20AQ96MK3 541 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 P2RX7Q99572 595 aaKnown RBP17.15■□□□□ 0.34
SF3B4-201ENST00000271628 EHMT1Q9H9B1 1298 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 CTNND2Q9UQB3 1225 aa17.15■□□□□ 0.34
SF3B4-201ENST00000271628 CFBP00751 764 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 SPAG1Q07617 926 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 ARHGAP27Q6ZUM4 889 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 ADSSL1Q8N142 457 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 BLOC1S4Q9NUP1 217 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 GPRC5DQ9NZD1 345 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 PVALEFA0A1B0GWK0 134 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 PSMA7O14818 248 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms