RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Sept7O55131 436 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Map3k7clP58500 142 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Epha2Q03145 977 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 LRWD1Q8BUI3 648 aaKnown RBP17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Ppp2r3dQ9Z176 491 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Col16a1Q8BLX7 1580 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Art2aP17981 287 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Bola2Q8BGS2 86 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 HlfQ8BW74 295 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Csgalnact2Q8C1F4 542 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Fam228aQ8CDW1 299 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Mcur1Q9CXD6 340 aa17.03■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Nr2f2P43135 414 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 AdkP55264 361 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Zbtb7bQ64321 544 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Sf3b3Q921M3 1217 aaKnown RBP17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Cib2Q9Z309 187 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Apol6B7ZC55 329 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Caprin2Q05A80 1031 aaKnown RBP17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 NeblQ0II04 452 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Arhgef16Q3U5C8 713 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Sfi1Q3UZY0 1216 aaKnown RBP17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Anks6Q6GQX6 883 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Slc17a8Q8BFU8 601 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Etnk1Q9D4V0 363 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 MesdQ9ERE7 224 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Ercc4Q9QZD4 917 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 PplQ9R269 1755 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Diaph2O70566 1098 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Pik3caP42337 1068 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 Fam89aQ14BJ1 175 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 D130040H23RikQ8BII3 405 aa17.02■□□□□ 0.32
Ccdc88b-201ENSMUST00000113440 CpdO89001 1377 aa17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Gm7356A0A087WSA6 508 aa17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Cyp2d34L7N463 504 aa17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 P4hbP09103 509 aaKnown RBP17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Ccdc28aQ8CEI3 192 aa17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Znf830Q8R1N0 363 aaKnown RBP17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Mis18aQ9CZJ6 204 aa17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 IqcdQ9D3V1 458 aa17.02■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Gpr161B2RPY5 545 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tcp11Q01755 566 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Qrich1Q3UA37 777 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tfcp2l1Q3UNW5 479 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Swap70Q6A028 585 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Myo1hQ9D6A1 958 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tcp1P11983 556 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Mum1l1Q4VA55 681 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tor4aQ8BH02 426 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Eif2aQ8BJW6 581 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Kctd6Q8BNL5 237 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Mxra7Q9CZH7 178 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Sgpp1Q9JI99 430 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Kif20bQ80WE4 1774 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Hps5P59438 1126 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Eepd1Q3TGW2 569 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tmem109Q3UBX0 243 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Dzip1lQ499E4 774 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 CrkQ64010 304 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Spag7Q7TNE3 227 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Frmd7A2AD83 703 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Spata5Q3UMC0 893 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Hoxa13Q62424 386 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Eif4a3Q91VC3 411 aaKnown RBP17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Ndst4Q9EQW8 872 aa17.01■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Gm11549A0A286YD83 63 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Fbxl16A2RT62 479 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Q91WD4 421 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 BaatQ91X34 420 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Cpsf2O35218 782 aaKnown RBP17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Polr2fP61219 127 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Cep70Q6IQY5 616 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 B4galnt4Q766D5 1034 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Fbxo18Q8K2I9 1042 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Defb15Q8R2I5 79 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Creb3l3Q91XE9 479 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Ndufv1Q91YT0 464 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Dpp7Q9ET22 506 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Arl6ip4Q9JM93 229 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Trpc3Q9QZC1 836 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Map3k15A2AQW0 1331 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Chd4Q6PDQ2 1915 aaKnown RBP17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Gm10134F6ZQC6 126 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 SlmapQ3URD3 845 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Zbtb39Q6PDK0 712 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Ric8aQ3TIR3 530 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Map3k9Q3U1V8 1077 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Mettl14Q3UIK4 456 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Olfr119Q7TRJ5 321 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 FibpQ9JI19 357 aa17■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Arhgef10lA2AWP8 1280 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tmem63cQ8CBX0 802 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Gbp7Q91Z40 638 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Krtap5-3Q9D226 196 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 CoasyQ9DBL7 563 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Gkap1Q9JMB0 366 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Atp2a2O55143 1044 aaKnown RBP16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Tnni3P48787 211 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Rnf207Q3V3A7 635 aa16.99■□□□□ 0.31
Ccdc88b-201ENSMUST00000113440 Nsrp1Q5NCR9 542 aa16.99■□□□□ 0.31
Retrieved 100 of 22,080 RNA–protein pairs in 23 ms