RNA–Protein interactions for RNA: ENST00000641523.1

CASC19-238, Transcript of cancer susceptibility 19, human

BASIC

Gene CASC19, Length 1,558 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-238	ENST00000641523	TIE1	P35590	1138 aa		11.51	□□□□□ -0.57
CASC19-238	ENST00000641523	ERCC6	Q03468	1493 aa		11.51	□□□□□ -0.57
CASC19-238	ENST00000641523	SEMA3E	O15041	775 aa		11.5	□□□□□ -0.57
CASC19-238	ENST00000641523	MFSD10	Q14728	455 aa		11.5	□□□□□ -0.57
CASC19-238	ENST00000641523	MROH2B	Q7Z745	1585 aa		11.49	□□□□□ -0.57
CASC19-238	ENST00000641523	DDX27	Q96GQ7	796 aa	Known RBP	11.49	□□□□□ -0.57
CASC19-238	ENST00000641523	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.49	□□□□□ -0.57
CASC19-238	ENST00000641523	TULP1	O00294	542 aa	Predicted RBP	11.48	□□□□□ -0.57
CASC19-238	ENST00000641523	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.48	□□□□□ -0.57	7e-8	■□□□□ 10.2
CASC19-238	ENST00000641523	CUX2	O14529	1486 aa		11.48	□□□□□ -0.57
CASC19-238	ENST00000641523	TESPA1	A2RU30	521 aa	Predicted RBP	11.46	□□□□□ -0.57
CASC19-238	ENST00000641523	GALR2	O43603	387 aa	Predicted RBP	11.45	□□□□□ -0.58
CASC19-238	ENST00000641523	ILDR1	Q86SU0	546 aa	Predicted RBP	11.44	□□□□□ -0.58
CASC19-238	ENST00000641523	TRIM35	Q9UPQ4	493 aa		11.43	□□□□□ -0.58
CASC19-238	ENST00000641523	DPY19L2	Q6NUT2	758 aa		11.41	□□□□□ -0.58
CASC19-238	ENST00000641523	LAMC3	Q9Y6N6	1575 aa		11.41	□□□□□ -0.58
CASC19-238	ENST00000641523	CAMK2B	Q13554	666 aa		11.41	□□□□□ -0.58
CASC19-238	ENST00000641523	ZC3H15	Q8WU90	426 aa	Known RBP	11.41	□□□□□ -0.58
CASC19-238	ENST00000641523	HAX1	O00165	279 aa		11.39	□□□□□ -0.59
CASC19-238	ENST00000641523	EVX2	Q03828	476 aa		11.39	□□□□□ -0.59
CASC19-238	ENST00000641523	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.39	□□□□□ -0.59
CASC19-238	ENST00000641523	NES	P48681	1621 aa		11.38	□□□□□ -0.59
CASC19-238	ENST00000641523	GPHN	Q9NQX3	736 aa	Predicted RBP	11.37	□□□□□ -0.59
CASC19-238	ENST00000641523	PDS5B	Q9NTI5	1447 aa		11.37	□□□□□ -0.59
CASC19-238	ENST00000641523	PPP1R15B	Q5SWA1	713 aa		11.37	□□□□□ -0.59
CASC19-238	ENST00000641523	ATN1	P54259	1190 aa	Predicted RBP	11.34	□□□□□ -0.59
CASC19-238	ENST00000641523	CADPS	Q9ULU8	1353 aa		11.33	□□□□□ -0.59
CASC19-238	ENST00000641523	SMYD5	Q6GMV2	418 aa		11.33	□□□□□ -0.6
CASC19-238	ENST00000641523	MICALL2	Q8IY33	904 aa		11.33	□□□□□ -0.6
CASC19-238	ENST00000641523	PDCD7	Q8N8D1	485 aa	Known RBP	11.33	□□□□□ -0.6
CASC19-238	ENST00000641523	WIZ	O95785	1651 aa		11.32	□□□□□ -0.6
CASC19-238	ENST00000641523	DSG2	Q14126	1118 aa		11.31	□□□□□ -0.6
CASC19-238	ENST00000641523	RSF1	Q96T23	1441 aa	Predicted RBP	11.31	□□□□□ -0.6
CASC19-238	ENST00000641523	MLLT3	P42568	568 aa	Predicted RBP	11.3	□□□□□ -0.6
CASC19-238	ENST00000641523	SLC24A3	Q9HC58	644 aa		11.3	□□□□□ -0.6
CASC19-238	ENST00000641523	EMILIN3	Q9NT22	766 aa		11.3	□□□□□ -0.6
CASC19-238	ENST00000641523	ATMIN	O43313	823 aa	Predicted RBP	11.29	□□□□□ -0.6
CASC19-238	ENST00000641523	TMEM132A	Q24JP5	1023 aa		11.29	□□□□□ -0.6
CASC19-238	ENST00000641523	THOC2	Q8NI27	1593 aa	Known RBP	11.28	□□□□□ -0.6
CASC19-238	ENST00000641523	GTF3C3	Q9Y5Q9	886 aa		11.28	□□□□□ -0.6
CASC19-238	ENST00000641523	DPYSL4	O14531	572 aa		11.28	□□□□□ -0.6
CASC19-238	ENST00000641523	CLCN6	P51797	869 aa		11.28	□□□□□ -0.6
CASC19-238	ENST00000641523	BRPF1	P55201	1214 aa	Predicted RBP	11.28	□□□□□ -0.6
CASC19-238	ENST00000641523	IRX5	P78411	483 aa	Predicted RBP	11.28	□□□□□ -0.6
CASC19-238	ENST00000641523	TOP2A	P11388	1531 aa	Known RBP	11.27	□□□□□ -0.61
CASC19-238	ENST00000641523	TMC2	Q8TDI7	906 aa		11.27	□□□□□ -0.61
CASC19-238	ENST00000641523	RBM26	Q5T8P6	1007 aa	Known RBP	11.26	□□□□□ -0.61
CASC19-238	ENST00000641523	OCEL1	Q9H607	264 aa		11.26	□□□□□ -0.61
CASC19-238	ENST00000641523	ZMYND10	O75800	440 aa		11.25	□□□□□ -0.61
CASC19-238	ENST00000641523	ASTL	Q6HA08	431 aa	Predicted RBP	11.25	□□□□□ -0.61
CASC19-238	ENST00000641523	BOLA1	Q9Y3E2	137 aa		11.24	□□□□□ -0.61
CASC19-238	ENST00000641523	FOXK1	P85037	733 aa		11.24	□□□□□ -0.61
CASC19-238	ENST00000641523	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.24	□□□□□ -0.61
CASC19-238	ENST00000641523	KIF21A	Q7Z4S6	1674 aa		11.23	□□□□□ -0.61
CASC19-238	ENST00000641523	MRC2	Q9UBG0	1479 aa		11.23	□□□□□ -0.61
CASC19-238	ENST00000641523	C2orf72	A6NCS6	295 aa		11.22	□□□□□ -0.61
CASC19-238	ENST00000641523	IER5L	Q5T953	404 aa		11.22	□□□□□ -0.61
CASC19-238	ENST00000641523	PLPP6	Q8IY26	295 aa		11.22	□□□□□ -0.61
CASC19-238	ENST00000641523	CFTR	P13569	1480 aa		11.22	□□□□□ -0.61
CASC19-238	ENST00000641523	CEP164	Q9UPV0	1460 aa		11.22	□□□□□ -0.61
CASC19-238	ENST00000641523	NEUROD2	Q15784	382 aa		11.21	□□□□□ -0.61
CASC19-238	ENST00000641523	BARGIN	Q6ZT62	677 aa		11.21	□□□□□ -0.61
CASC19-238	ENST00000641523		G3V3G9	751 aa		11.2	□□□□□ -0.62
CASC19-238	ENST00000641523	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.2	□□□□□ -0.62
CASC19-238	ENST00000641523	PDIA6	Q15084	440 aa		11.2	□□□□□ -0.62
CASC19-238	ENST00000641523	FANCD2	Q9BXW9	1451 aa		11.19	□□□□□ -0.62
CASC19-238	ENST00000641523	WDR62	O43379	1518 aa		11.19	□□□□□ -0.62
CASC19-238	ENST00000641523	PLCG2	P16885	1265 aa		11.19	□□□□□ -0.62
CASC19-238	ENST00000641523	GPIHBP1	Q8IV16	184 aa		11.19	□□□□□ -0.62
CASC19-238	ENST00000641523	DAXX	Q9UER7	740 aa	Predicted RBP	11.19	□□□□□ -0.62
CASC19-238	ENST00000641523	TIMELESS	Q9UNS1	1208 aa		11.19	□□□□□ -0.62
CASC19-238	ENST00000641523	KIF3C	O14782	793 aa		11.18	□□□□□ -0.62
CASC19-238	ENST00000641523	GABBR2	O75899	941 aa		11.16	□□□□□ -0.62
CASC19-238	ENST00000641523	PELP1	Q8IZL8	1130 aa	Known RBP	11.15	□□□□□ -0.62
CASC19-238	ENST00000641523	TMEM92	Q6UXU6	159 aa		11.14	□□□□□ -0.63
CASC19-238	ENST00000641523	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.14	□□□□□ -0.63
CASC19-238	ENST00000641523	MAP3K9	P80192	1104 aa		11.13	□□□□□ -0.63
CASC19-238	ENST00000641523	KRI1	Q8N9T8	703 aa	Known RBP	11.13	□□□□□ -0.63
CASC19-238	ENST00000641523	COLQ	Q9Y215	455 aa	Predicted RBP	11.12	□□□□□ -0.63
CASC19-238	ENST00000641523	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
CASC19-238	ENST00000641523	SEC24B	O95487	1268 aa		11.11	□□□□□ -0.63
CASC19-238	ENST00000641523	AK7	Q96M32	723 aa		11.11	□□□□□ -0.63
CASC19-238	ENST00000641523	CCDC88B	A6NC98	1476 aa		11.11	□□□□□ -0.63
CASC19-238	ENST00000641523	GRXCR2	A6NFK2	248 aa		11.1	□□□□□ -0.63
CASC19-238	ENST00000641523	DCBLD2	Q96PD2	775 aa		11.09	□□□□□ -0.63
CASC19-238	ENST00000641523	PRDM2	Q13029	1718 aa		11.07	□□□□□ -0.64
CASC19-238	ENST00000641523	URB2	Q14146	1524 aa	Known RBP	11.06	□□□□□ -0.64
CASC19-238	ENST00000641523	POTEF	A5A3E0	1075 aa		11.05	□□□□□ -0.64
CASC19-238	ENST00000641523	OXER1	Q8TDS5	423 aa		11.05	□□□□□ -0.64
CASC19-238	ENST00000641523	GPR37	O15354	613 aa		11.04	□□□□□ -0.64
CASC19-238	ENST00000641523	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.04	□□□□□ -0.64
CASC19-238	ENST00000641523	ABCC8	Q09428	1581 aa		11.04	□□□□□ -0.64
CASC19-238	ENST00000641523	NUTM2F	A1L443	756 aa		11.03	□□□□□ -0.64
CASC19-238	ENST00000641523	TRIM66	O15016	1216 aa		11.02	□□□□□ -0.65
CASC19-238	ENST00000641523	SLC39A7	Q92504	469 aa		11.02	□□□□□ -0.65
CASC19-238	ENST00000641523	OSBP	P22059	807 aa		11.01	□□□□□ -0.65
CASC19-238	ENST00000641523	DDX12P	Q92771	950 aa		11.01	□□□□□ -0.65
CASC19-238	ENST00000641523	IFT140	Q96RY7	1462 aa		11	□□□□□ -0.65
CASC19-238	ENST00000641523	TBC1D12	O60347	775 aa		10.99	□□□□□ -0.65
CASC19-238	ENST00000641523	C7	P10643	843 aa		10.99	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms