RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 CHIC1Q5VXU3 224 aa29.49■■■□□ 2.31
CIITA-215ENST00000637439 YEATS2Q9ULM3 1422 aa29.48■■■□□ 2.31
CIITA-215ENST00000637439 MYO5CQ9NQX4 1742 aa29.47■■■□□ 2.31
CIITA-215ENST00000637439 EFCAB2Q5VUJ9 269 aa29.46■■■□□ 2.31
CIITA-215ENST00000637439 LMTK3Q96Q04 1460 aa29.44■■■□□ 2.3
CIITA-215ENST00000637439 KIF14Q15058 1648 aa29.42■■■□□ 2.3
CIITA-215ENST00000637439 CLIP1P30622 1438 aa29.4■■■□□ 2.3
CIITA-215ENST00000637439 TROQ12816 1431 aaPredicted RBP29.4■■■□□ 2.3
CIITA-215ENST00000637439 SIGLEC1Q9BZZ2 1709 aa29.4■■■□□ 2.3
CIITA-215ENST00000637439 FBXO41Q8TF61 875 aa29.37■■■□□ 2.29
CIITA-215ENST00000637439 ATP10AO60312 1499 aa29.36■■■□□ 2.29
CIITA-215ENST00000637439 MLECQ14165 292 aa29.34■■■□□ 2.29
CIITA-215ENST00000637439 C9orf84Q5VXU9 1444 aa29.34■■■□□ 2.29
CIITA-215ENST00000637439 ZNF518AQ6AHZ1 1483 aa29.34■■■□□ 2.29
CIITA-215ENST00000637439 FER1L4A9Z1Z3 1794 aa29.34■■■□□ 2.29
CIITA-215ENST00000637439 ARHGAP5Q13017 1502 aa29.33■■■□□ 2.29
CIITA-215ENST00000637439 PLPPR3Q6T4P5 718 aa29.31■■■□□ 2.28
CIITA-215ENST00000637439 LRRIQ1Q96JM4 1722 aa29.31■■■□□ 2.28
CIITA-215ENST00000637439 ARHGEF12Q9NZN5 1544 aa29.27■■■□□ 2.28
CIITA-215ENST00000637439 CCDC18Q5T9S5 1454 aa29.27■■■□□ 2.28
CIITA-215ENST00000637439 KDM5CP41229 1560 aa29.26■■■□□ 2.28
CIITA-215ENST00000637439 CASKIN1Q8WXD9 1431 aa29.25■■■□□ 2.27
CIITA-215ENST00000637439 HSPA2P54652 639 aa29.24■■■□□ 2.27
CIITA-215ENST00000637439 AFAP1Q8N556 730 aa29.24■■■□□ 2.27
CIITA-215ENST00000637439 CDC42BPBQ9Y5S2 1711 aa29.22■■■□□ 2.27
CIITA-215ENST00000637439 MYT1LQ9UL68 1186 aa29.21■■■□□ 2.27
CIITA-215ENST00000637439 PREX2Q70Z35 1606 aa29.19■■■□□ 2.26
CIITA-215ENST00000637439 REREQ9P2R6 1566 aa29.17■■■□□ 2.26
CIITA-215ENST00000637439 MLH3Q9UHC1 1453 aa29.17■■■□□ 2.26
CIITA-215ENST00000637439 DIP2CQ9Y2E4 1556 aa29.16■■■□□ 2.26
CIITA-215ENST00000637439 FYCO1Q9BQS8 1478 aa29.14■■■□□ 2.26
CIITA-215ENST00000637439 PREX1Q8TCU6 1659 aa29.14■■■□□ 2.26
CIITA-215ENST00000637439 ABCC1P33527 1531 aa29.13■■■□□ 2.25
CIITA-215ENST00000637439 ABCA6Q8N139 1617 aa29.1■■■□□ 2.25
CIITA-215ENST00000637439 ITSN2Q9NZM3 1697 aa29.1■■■□□ 2.25
CIITA-215ENST00000637439 CEBPAP49715 358 aaPredicted RBP29.09■■■□□ 2.25
CIITA-215ENST00000637439 TRAPPC8Q9Y2L5 1435 aa29.09■■■□□ 2.25
CIITA-215ENST00000637439 CDC42BPAQ5VT25 1732 aa29.08■■■□□ 2.25
CIITA-215ENST00000637439 AGLP35573 1532 aa29.07■■■□□ 2.24
CIITA-215ENST00000637439 SETD1BQ9UPS6 1966 aaKnown RBP29.04■■■□□ 2.24
CIITA-215ENST00000637439 ESF1Q9H501 851 aaKnown RBP29.03■■■□□ 2.24
CIITA-215ENST00000637439 UHRF1BP1Q6BDS2 1440 aa29.03■■■□□ 2.24
CIITA-215ENST00000637439 KIDINS220Q9ULH0 1771 aa29.01■■■□□ 2.23
CIITA-215ENST00000637439 CERKQ8TCT0 537 aa29■■■□□ 2.23
CIITA-215ENST00000637439 DMRT2Q9Y5R5 561 aa29■■■□□ 2.23
CIITA-215ENST00000637439 C3P01024 1663 aa28.97■■■□□ 2.23
CIITA-215ENST00000637439 ZNF777Q9ULD5 760 aaPredicted RBP28.97■■■□□ 2.23
CIITA-215ENST00000637439 GPATCH8Q9UKJ3 1502 aaKnown RBP28.96■■■□□ 2.23
CIITA-215ENST00000637439 SAMD9LQ8IVG5 1584 aa28.96■■■□□ 2.23
CIITA-215ENST00000637439 CNTLNQ9NXG0 1405 aa28.94■■■□□ 2.22
CIITA-215ENST00000637439 SYCP2Q9BX26 1530 aa28.92■■■□□ 2.22
CIITA-215ENST00000637439 STRCQ7RTU9 1775 aa28.92■■■□□ 2.22
CIITA-215ENST00000637439 SPAG9O60271 1321 aaKnown RBP28.92■■■□□ 2.22
CIITA-215ENST00000637439 PLEKHH2Q8IVE3 1493 aa28.91■■■□□ 2.22
CIITA-215ENST00000637439 KIAA1107Q9UPP5 1409 aa28.9■■■□□ 2.22
CIITA-215ENST00000637439 CFDP1Q9UEE9 299 aaPredicted RBP28.89■■■□□ 2.22
CIITA-215ENST00000637439 CCNB3Q8WWL7 1395 aa28.88■■■□□ 2.21
CIITA-215ENST00000637439 HNRNPMP52272 730 aaKnown RBP eCLIP28.88■■■□□ 2.21
CIITA-215ENST00000637439 MTUS2Q5JR59 1369 aa28.87■■■□□ 2.21
CIITA-215ENST00000637439 ATP7AQ04656 1500 aa28.84■■■□□ 2.21
CIITA-215ENST00000637439 MROH2AA6NES4 1674 aa28.84■■■□□ 2.21
CIITA-215ENST00000637439 PTPRTO14522 1441 aa28.82■■■□□ 2.2
CIITA-215ENST00000637439 SUPT6HQ7KZ85 1726 aaKnown RBP28.8■■■□□ 2.2
CIITA-215ENST00000637439 INO80Q9ULG1 1556 aaPredicted RBP28.8■■■□□ 2.2
CIITA-215ENST00000637439 NPATQ14207 1427 aa28.8■■■□□ 2.2
CIITA-215ENST00000637439 A2MP01023 1474 aa28.78■■■□□ 2.2
CIITA-215ENST00000637439 PLXNC1O60486 1568 aa28.77■■■□□ 2.2
CIITA-215ENST00000637439 ZMYM3Q14202 1370 aa28.76■■■□□ 2.2
CIITA-215ENST00000637439 EHBP1L1Q8N3D4 1523 aa28.74■■■□□ 2.19
CIITA-215ENST00000637439 NCOA1Q15788 1441 aa28.73■■■□□ 2.19
CIITA-215ENST00000637439 TIAM1Q13009 1591 aa28.72■■■□□ 2.19
CIITA-215ENST00000637439 CLTCQ00610 1675 aaKnown RBP28.7■■■□□ 2.19
CIITA-215ENST00000637439 ADGBQ8N7X0 1667 aa28.7■■■□□ 2.19
CIITA-215ENST00000637439 PPP6R1Q9UPN7 881 aa28.7■■■□□ 2.18
CIITA-215ENST00000637439 CEP162Q5TB80 1403 aa28.69■■■□□ 2.18
CIITA-215ENST00000637439 GGT6Q6P531 493 aa28.67■■■□□ 2.18
CIITA-215ENST00000637439 ZNF644Q9H582 1327 aaPredicted RBP28.67■■■□□ 2.18
CIITA-215ENST00000637439 CAMSAP1Q5T5Y3 1602 aa28.66■■■□□ 2.18
CIITA-215ENST00000637439 MBD5Q9P267 1494 aa28.66■■■□□ 2.18
CIITA-215ENST00000637439 RTEL1-TNFRSF6BF6WH68 1400 aa28.65■■■□□ 2.18
CIITA-215ENST00000637439 LTBP4Q8N2S1 1624 aa28.61■■■□□ 2.17
CIITA-215ENST00000637439 PTPRKQ15262 1439 aa28.61■■■□□ 2.17
CIITA-215ENST00000637439 ZNF142P52746 1687 aaPredicted RBP28.61■■■□□ 2.17
CIITA-215ENST00000637439 MYO3AQ8NEV4 1616 aa28.61■■■□□ 2.17
CIITA-215ENST00000637439 IQSEC2Q5JU85 1478 aa28.6■■■□□ 2.17
CIITA-215ENST00000637439 DHX29Q7Z478 1369 aaKnown RBP28.58■■■□□ 2.17
CIITA-215ENST00000637439 RSPH4AQ5TD94 716 aa28.57■■■□□ 2.16
CIITA-215ENST00000637439 PLA2R1Q13018 1463 aa28.57■■■□□ 2.16
CIITA-215ENST00000637439 CEP170BQ9Y4F5 1589 aaPredicted RBP28.57■■■□□ 2.16
CIITA-215ENST00000637439 PKD2Q13563 968 aa28.56■■■□□ 2.16
CIITA-215ENST00000637439 NCOA2Q15596 1464 aa28.55■■■□□ 2.16
CIITA-215ENST00000637439 CCDC141Q6ZP82 1450 aa28.54■■■□□ 2.16
CIITA-215ENST00000637439 NCKAP5LQ9HCH0 1330 aa28.54■■■□□ 2.16
CIITA-215ENST00000637439 CAMSAP2Q08AD1 1489 aa28.52■■■□□ 2.16
CIITA-215ENST00000637439 FAM135AQ9P2D6 1515 aa28.49■■■□□ 2.15
CIITA-215ENST00000637439 TCOF1Q13428 1488 aaKnown RBP28.49■■■□□ 2.15
CIITA-215ENST00000637439 KIF3BO15066 747 aa28.48■■■□□ 2.15
CIITA-215ENST00000637439 A2ML1A8K2U0 1454 aa28.47■■■□□ 2.15
CIITA-215ENST00000637439 ARHGEF5Q12774 1597 aa28.45■■■□□ 2.14
CIITA-215ENST00000637439 KDM5DQ9BY66 1539 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms