RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZNF777Q9ULD5 760 aaPredicted RBP25.07■■□□□ 1.6
CLN3-252ENST00000636907 ABCC5O15440 1437 aa25.07■■□□□ 1.6
CLN3-252ENST00000636907 KCNH8Q96L42 1107 aa25.07■■□□□ 1.6
CLN3-252ENST00000636907 CDC42BPBQ9Y5S2 1711 aa25.05■■□□□ 1.6
CLN3-252ENST00000636907 WDR7Q9Y4E6 1490 aa25.04■■□□□ 1.6
CLN3-252ENST00000636907 NAIPQ13075 1403 aa25.04■■□□□ 1.6
CLN3-252ENST00000636907 CHIC2Q9UKJ5 165 aa25.04■■□□□ 1.6
CLN3-252ENST00000636907 AKNAQ7Z591 1439 aa25.02■■□□□ 1.6
CLN3-252ENST00000636907 MYO5CQ9NQX4 1742 aa25.01■■□□□ 1.59
CLN3-252ENST00000636907 RIMBP3CA6NJZ7 1639 aa25■■□□□ 1.59
CLN3-252ENST00000636907 RIMBP3BA6NNM3 1639 aa25■■□□□ 1.59
CLN3-252ENST00000636907 RIMBP3Q9UFD9 1639 aa25■■□□□ 1.59
CLN3-252ENST00000636907 GCC2Q8IWJ2 1684 aa24.99■■□□□ 1.59
CLN3-252ENST00000636907 RRP7BPQ9NSQ0 103 aa24.98■■□□□ 1.59
CLN3-252ENST00000636907 ASXL2Q76L83 1435 aa24.98■■□□□ 1.59
CLN3-252ENST00000636907 SAMD9LQ8IVG5 1584 aa24.98■■□□□ 1.59
CLN3-252ENST00000636907 CROCC2H7BZ55 1655 aa24.97■■□□□ 1.59
CLN3-252ENST00000636907 ARHGAP5Q13017 1502 aa24.97■■□□□ 1.59
CLN3-252ENST00000636907 NPM1P06748 294 aaKnown RBP eCLIP24.97■■□□□ 1.59
CLN3-252ENST00000636907 ROCK1Q13464 1354 aa24.96■■□□□ 1.59
CLN3-252ENST00000636907 PLCH2O75038 1416 aa24.94■■□□□ 1.58
CLN3-252ENST00000636907 CLSPNQ9HAW4 1339 aa24.94■■□□□ 1.58
CLN3-252ENST00000636907 ARHGEF5Q12774 1597 aa24.92■■□□□ 1.58
CLN3-252ENST00000636907 ADGBQ8N7X0 1667 aa24.91■■□□□ 1.58
CLN3-252ENST00000636907 MBD5Q9P267 1494 aa24.91■■□□□ 1.58
CLN3-252ENST00000636907 ABCA9Q8IUA7 1624 aa24.89■■□□□ 1.58
CLN3-252ENST00000636907 HNRNPMP52272 730 aaKnown RBP eCLIP24.89■■□□□ 1.58
CLN3-252ENST00000636907 CYB5RLQ6IPT4 315 aa24.89■■□□□ 1.58
CLN3-252ENST00000636907 ADGRL2O95490 1459 aa24.88■■□□□ 1.57
CLN3-252ENST00000636907 SHANK2Q9UPX8 1470 aa24.88■■□□□ 1.57
CLN3-252ENST00000636907 KDM6BO15054 1643 aa24.88■■□□□ 1.57
CLN3-252ENST00000636907 MAPKBP1O60336 1514 aa24.86■■□□□ 1.57
CLN3-252ENST00000636907 ARAP3Q8WWN8 1544 aa24.86■■□□□ 1.57
CLN3-252ENST00000636907 SYCP2Q9BX26 1530 aa24.86■■□□□ 1.57
CLN3-252ENST00000636907 NCOA1Q15788 1441 aa24.86■■□□□ 1.57
CLN3-252ENST00000636907 CCDC141Q6ZP82 1450 aa24.85■■□□□ 1.57
CLN3-252ENST00000636907 C9orf84Q5VXU9 1444 aa24.85■■□□□ 1.57
CLN3-252ENST00000636907 PLEKHH2Q8IVE3 1493 aa24.85■■□□□ 1.57
CLN3-252ENST00000636907 KIAA1107Q9UPP5 1409 aa24.84■■□□□ 1.57
CLN3-252ENST00000636907 EFCAB2Q5VUJ9 269 aa24.84■■□□□ 1.57
CLN3-252ENST00000636907 ANKRD30AQ9BXX3 1397 aa24.81■■□□□ 1.56
CLN3-252ENST00000636907 TSPY4P0CV99 314 aa24.81■■□□□ 1.56
CLN3-252ENST00000636907 TSPY10P0CW01 314 aa24.81■■□□□ 1.56
CLN3-252ENST00000636907 RSPH4AQ5TD94 716 aa24.81■■□□□ 1.56
CLN3-252ENST00000636907 ARHGEF12Q9NZN5 1544 aa24.8■■□□□ 1.56
CLN3-252ENST00000636907 ABCC1P33527 1531 aa24.79■■□□□ 1.56
CLN3-252ENST00000636907 MAST1Q9Y2H9 1570 aa24.75■■□□□ 1.55
CLN3-252ENST00000636907 FANCAO15360 1455 aa24.74■■□□□ 1.55
CLN3-252ENST00000636907 TRIM52Q96A61 297 aa24.72■■□□□ 1.55
CLN3-252ENST00000636907 ACIN1Q9UKV3 1341 aaKnown RBP24.7■■□□□ 1.54
CLN3-252ENST00000636907 ANKRD50Q9ULJ7 1429 aa24.7■■□□□ 1.54
CLN3-252ENST00000636907 TRAPPC8Q9Y2L5 1435 aa24.7■■□□□ 1.54
CLN3-252ENST00000636907 KIF15Q9NS87 1388 aa24.69■■□□□ 1.54
CLN3-252ENST00000636907 CD109Q6YHK3 1445 aa24.68■■□□□ 1.54
CLN3-252ENST00000636907 DENND4BO75064 1496 aaPredicted RBP24.66■■□□□ 1.54
CLN3-252ENST00000636907 PLXNC1O60486 1568 aa24.65■■□□□ 1.54
CLN3-252ENST00000636907 ADGRL1O94910 1474 aa24.64■■□□□ 1.54
CLN3-252ENST00000636907 SIN3AQ96ST3 1273 aa24.63■■□□□ 1.53
CLN3-252ENST00000636907 MPHOSPH9Q99550 1183 aa24.62■■□□□ 1.53
CLN3-252ENST00000636907 CFAP74Q9C0B2 1584 aa24.61■■□□□ 1.53
CLN3-252ENST00000636907 SCAPERQ9BY12 1400 aa24.61■■□□□ 1.53
CLN3-252ENST00000636907 AFAP1Q8N556 730 aa24.6■■□□□ 1.53
CLN3-252ENST00000636907 GLI2P10070 1586 aa24.59■■□□□ 1.53
CLN3-252ENST00000636907 PZPP20742 1482 aa24.58■■□□□ 1.53
CLN3-252ENST00000636907 MAP3K4Q9Y6R4 1608 aa24.58■■□□□ 1.52
CLN3-252ENST00000636907 ZFYVE16Q7Z3T8 1539 aa24.57■■□□□ 1.52
CLN3-252ENST00000636907 NEUROD1Q13562 356 aa24.57■■□□□ 1.52
CLN3-252ENST00000636907 SPAG9O60271 1321 aaKnown RBP24.57■■□□□ 1.52
CLN3-252ENST00000636907 RTEL1-TNFRSF6BF6WH68 1400 aa24.57■■□□□ 1.52
CLN3-252ENST00000636907 DUOX2Q9NRD8 1548 aa24.55■■□□□ 1.52
CLN3-252ENST00000636907 DIP2BQ9P265 1576 aa24.54■■□□□ 1.52
CLN3-252ENST00000636907 SLC4A1APQ9BWU0 796 aaKnown RBP24.53■■□□□ 1.52
CLN3-252ENST00000636907 INO80Q9ULG1 1556 aaPredicted RBP24.53■■□□□ 1.52
CLN3-252ENST00000636907 KDM5DQ9BY66 1539 aa24.52■■□□□ 1.52
CLN3-252ENST00000636907 NEO1Q92859 1461 aa24.52■■□□□ 1.52
CLN3-252ENST00000636907 ATP7AQ04656 1500 aa24.51■■□□□ 1.51
CLN3-252ENST00000636907 NUP155O75694 1391 aa24.5■■□□□ 1.51
CLN3-252ENST00000636907 FOXD1Q16676 465 aa24.5■■□□□ 1.51
CLN3-252ENST00000636907 ERBINQ96RT1 1412 aa24.49■■□□□ 1.51
CLN3-252ENST00000636907 FAM69CQ0P6D2 419 aa24.49■■□□□ 1.51
CLN3-252ENST00000636907 ZNF518AQ6AHZ1 1483 aa24.48■■□□□ 1.51
CLN3-252ENST00000636907 TIMELESSQ9UNS1 1208 aa24.47■■□□□ 1.51
CLN3-252ENST00000636907 POGZQ7Z3K3 1410 aa24.47■■□□□ 1.51
CLN3-252ENST00000636907 UNC13BO14795 1591 aa24.47■■□□□ 1.51
CLN3-252ENST00000636907 ANKRD30BQ9BXX2 1392 aa24.45■■□□□ 1.5
CLN3-252ENST00000636907 KDM5CP41229 1560 aa24.44■■□□□ 1.5
CLN3-252ENST00000636907 KIDINS220Q9ULH0 1771 aa24.43■■□□□ 1.5
CLN3-252ENST00000636907 TONSLQ96HA7 1378 aa24.41■■□□□ 1.5
CLN3-252ENST00000636907 PKD2Q13563 968 aa24.41■■□□□ 1.5
CLN3-252ENST00000636907 MYT1LQ9UL68 1186 aa24.41■■□□□ 1.5
CLN3-252ENST00000636907 FAM135AQ9P2D6 1515 aa24.41■■□□□ 1.5
CLN3-252ENST00000636907 MAGI2Q86UL8 1455 aa24.39■■□□□ 1.5
CLN3-252ENST00000636907 PPRC1Q5VV67 1664 aaKnown RBP24.38■■□□□ 1.49
CLN3-252ENST00000636907 MLH3Q9UHC1 1453 aa24.37■■□□□ 1.49
CLN3-252ENST00000636907 HECW2Q9P2P5 1572 aa24.37■■□□□ 1.49
CLN3-252ENST00000636907 IQGAP3Q86VI3 1631 aa24.37■■□□□ 1.49
CLN3-252ENST00000636907 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.36■■□□□ 1.49
CLN3-252ENST00000636907 KIF13AQ9H1H9 1805 aa24.36■■□□□ 1.49
CLN3-252ENST00000636907 TSPOAP1O95153 1857 aa24.35■■□□□ 1.49
CLN3-252ENST00000636907 RPRD2Q5VT52 1461 aaKnown RBP24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 135.1 ms