RNA–Protein interactions for RNA: ENST00000636840.1

PNKP-226, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 117 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-226ENST00000636840 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
PNKP-226ENST00000636840 CFAP74Q9C0B2 1584 aa12.77□□□□□ -0.36
PNKP-226ENST00000636840 EHBP1L1Q8N3D4 1523 aa12.77□□□□□ -0.37
PNKP-226ENST00000636840 KANK4Q5T7N3 995 aaPredicted RBP12.76□□□□□ -0.37
PNKP-226ENST00000636840 TIAM1Q13009 1591 aa12.76□□□□□ -0.37
PNKP-226ENST00000636840 MYO5CQ9NQX4 1742 aa12.76□□□□□ -0.37
PNKP-226ENST00000636840 ADGRL1O94910 1474 aa12.75□□□□□ -0.37
PNKP-226ENST00000636840 LRRC9Q6ZRR7 1453 aa12.75□□□□□ -0.37
PNKP-226ENST00000636840 GPATCH8Q9UKJ3 1502 aaKnown RBP12.73□□□□□ -0.37
PNKP-226ENST00000636840 RSPH4AQ5TD94 716 aa12.73□□□□□ -0.37
PNKP-226ENST00000636840 AFAP1Q8N556 730 aa12.72□□□□□ -0.37
PNKP-226ENST00000636840 NCOA2Q15596 1464 aa12.72□□□□□ -0.37
PNKP-226ENST00000636840 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.37
PNKP-226ENST00000636840 HNRNPMP52272 730 aaKnown RBP eCLIP12.71□□□□□ -0.37
PNKP-226ENST00000636840 PLEKHH2Q8IVE3 1493 aa12.71□□□□□ -0.38
PNKP-226ENST00000636840 ARID4BQ4LE39 1312 aaPredicted RBP12.7□□□□□ -0.38
PNKP-226ENST00000636840 AEBP2Q6ZN18 517 aaPredicted RBP12.7□□□□□ -0.38
PNKP-226ENST00000636840 PREX2Q70Z35 1606 aa12.69□□□□□ -0.38
PNKP-226ENST00000636840 CDC42BPBQ9Y5S2 1711 aa12.68□□□□□ -0.38
PNKP-226ENST00000636840 ZNF518AQ6AHZ1 1483 aa12.68□□□□□ -0.38
PNKP-226ENST00000636840 MAGI2Q86UL8 1455 aa12.68□□□□□ -0.38
PNKP-226ENST00000636840 TSPY4P0CV99 314 aa12.68□□□□□ -0.38
PNKP-226ENST00000636840 TSPY10P0CW01 314 aa12.68□□□□□ -0.38
PNKP-226ENST00000636840 KIAA1107Q9UPP5 1409 aa12.68□□□□□ -0.38
PNKP-226ENST00000636840 SPAG9O60271 1321 aaKnown RBP12.67□□□□□ -0.38
PNKP-226ENST00000636840 POGZQ7Z3K3 1410 aa12.67□□□□□ -0.38
PNKP-226ENST00000636840 CDC42BPAQ5VT25 1732 aa12.67□□□□□ -0.38
PNKP-226ENST00000636840 ZNF644Q9H582 1327 aaPredicted RBP12.66□□□□□ -0.38
PNKP-226ENST00000636840 ITSN2Q9NZM3 1697 aa12.65□□□□□ -0.38
PNKP-226ENST00000636840 MYOM3Q5VTT5 1437 aa12.64□□□□□ -0.39
PNKP-226ENST00000636840 MIA2Q96PC5 1412 aa12.64□□□□□ -0.39
PNKP-226ENST00000636840 TRAPPC8Q9Y2L5 1435 aa12.63□□□□□ -0.39
PNKP-226ENST00000636840 RICTORQ6R327 1708 aa12.62□□□□□ -0.39
PNKP-226ENST00000636840 ABCC1P33527 1531 aa12.62□□□□□ -0.39
PNKP-226ENST00000636840 ATP10AO60312 1499 aa12.61□□□□□ -0.39
PNKP-226ENST00000636840 MLH3Q9UHC1 1453 aa12.61□□□□□ -0.39
PNKP-226ENST00000636840 PPARGC1BQ86YN6 1023 aaKnown RBP12.61□□□□□ -0.39
PNKP-226ENST00000636840 ZMYM4Q5VZL5 1548 aa12.61□□□□□ -0.39
PNKP-226ENST00000636840 ZFYVE16Q7Z3T8 1539 aa12.61□□□□□ -0.39
PNKP-226ENST00000636840 ARHGEF12Q9NZN5 1544 aa12.61□□□□□ -0.39
PNKP-226ENST00000636840 SAMD9LQ8IVG5 1584 aa12.6□□□□□ -0.39
PNKP-226ENST00000636840 SYCP2Q9BX26 1530 aa12.6□□□□□ -0.39
PNKP-226ENST00000636840 KDM4FA0A1W2PPD8 638 aa12.59□□□□□ -0.39
PNKP-226ENST00000636840 FAM50AQ14320 339 aaKnown RBP12.59□□□□□ -0.39
PNKP-226ENST00000636840 ESF1Q9H501 851 aaKnown RBP12.59□□□□□ -0.39
PNKP-226ENST00000636840 YEATS2Q9ULM3 1422 aa12.59□□□□□ -0.39
PNKP-226ENST00000636840 FRMPD1Q5SYB0 1578 aa12.59□□□□□ -0.39
PNKP-226ENST00000636840 CAMSAP2Q08AD1 1489 aa12.59□□□□□ -0.39
PNKP-226ENST00000636840 MLECQ14165 292 aa12.58□□□□□ -0.4
PNKP-226ENST00000636840 KDM5CP41229 1560 aa12.57□□□□□ -0.4
PNKP-226ENST00000636840 RTEL1-TNFRSF6BF6WH68 1400 aa12.57□□□□□ -0.4
PNKP-226ENST00000636840 C9orf84Q5VXU9 1444 aa12.57□□□□□ -0.4
PNKP-226ENST00000636840 MBD5Q9P267 1494 aa12.57□□□□□ -0.4
PNKP-226ENST00000636840 CCDC141Q6ZP82 1450 aa12.56□□□□□ -0.4
PNKP-226ENST00000636840 HECW2Q9P2P5 1572 aa12.56□□□□□ -0.4
PNKP-226ENST00000636840 FGD6Q6ZV73 1430 aa12.55□□□□□ -0.4
PNKP-226ENST00000636840 ARHGEF40Q8TER5 1519 aa12.55□□□□□ -0.4
PNKP-226ENST00000636840 PPP6R1Q9UPN7 881 aa12.52□□□□□ -0.41
PNKP-226ENST00000636840 ATP7AQ04656 1500 aa12.52□□□□□ -0.41
PNKP-226ENST00000636840 ARHGEF5Q12774 1597 aa12.52□□□□□ -0.41
PNKP-226ENST00000636840 PTPN23Q9H3S7 1636 aa12.51□□□□□ -0.41
PNKP-226ENST00000636840 GGT6Q6P531 493 aa12.51□□□□□ -0.41
PNKP-226ENST00000636840 CHIC2Q9UKJ5 165 aa12.51□□□□□ -0.41
PNKP-226ENST00000636840 DHX29Q7Z478 1369 aaKnown RBP12.51□□□□□ -0.41
PNKP-226ENST00000636840 KIF3BO15066 747 aa12.5□□□□□ -0.41
PNKP-226ENST00000636840 A2MP01023 1474 aa12.5□□□□□ -0.41
PNKP-226ENST00000636840 TCOF1Q13428 1488 aaKnown RBP12.5□□□□□ -0.41
PNKP-226ENST00000636840 KIDINS220Q9ULH0 1771 aa12.5□□□□□ -0.41
PNKP-226ENST00000636840 DIP2CQ9Y2E4 1556 aa12.49□□□□□ -0.41
PNKP-226ENST00000636840 RRP7BPQ9NSQ0 103 aa12.49□□□□□ -0.41
PNKP-226ENST00000636840 ANKRD30AQ9BXX3 1397 aa12.48□□□□□ -0.41
PNKP-226ENST00000636840 REREQ9P2R6 1566 aa12.47□□□□□ -0.41
PNKP-226ENST00000636840 AGLP35573 1532 aa12.47□□□□□ -0.41
PNKP-226ENST00000636840 ABCC5O15440 1437 aa12.47□□□□□ -0.41
PNKP-226ENST00000636840 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.47□□□□□ -0.41
PNKP-226ENST00000636840 ITGAEP38570 1179 aa12.47□□□□□ -0.41
PNKP-226ENST00000636840 PLPPR3Q6T4P5 718 aa12.47□□□□□ -0.41
PNKP-226ENST00000636840 ABCA6Q8N139 1617 aa12.47□□□□□ -0.41
PNKP-226ENST00000636840 DAPK1P53355 1430 aa12.46□□□□□ -0.41
PNKP-226ENST00000636840 BCORL1Q5H9F3 1711 aa12.46□□□□□ -0.41
PNKP-226ENST00000636840 INO80Q9ULG1 1556 aaPredicted RBP12.45□□□□□ -0.42
PNKP-226ENST00000636840 SHANK2Q9UPX8 1470 aa12.44□□□□□ -0.42
PNKP-226ENST00000636840 ADGBQ8N7X0 1667 aa12.44□□□□□ -0.42
PNKP-226ENST00000636840 KIF15Q9NS87 1388 aa12.43□□□□□ -0.42
PNKP-226ENST00000636840 MAST1Q9Y2H9 1570 aa12.43□□□□□ -0.42
PNKP-226ENST00000636840 WASHC2CQ9Y4E1 1318 aa12.43□□□□□ -0.42
PNKP-226ENST00000636840 ADAMTSL3P82987 1691 aa12.43□□□□□ -0.42
PNKP-226ENST00000636840 CNTLNQ9NXG0 1405 aa12.43□□□□□ -0.42
PNKP-226ENST00000636840 PTPRMP28827 1452 aa12.42□□□□□ -0.42
PNKP-226ENST00000636840 DNMT1P26358 1616 aaKnown RBP12.42□□□□□ -0.42
PNKP-226ENST00000636840 NCOA1Q15788 1441 aa12.41□□□□□ -0.42
PNKP-226ENST00000636840 DUOX2Q9NRD8 1548 aa12.41□□□□□ -0.42
PNKP-226ENST00000636840 CEBPAP49715 358 aaPredicted RBP12.4□□□□□ -0.42
PNKP-226ENST00000636840 RRBP1Q9P2E9 1410 aaKnown RBP12.39□□□□□ -0.43
PNKP-226ENST00000636840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.39□□□□□ -0.43
PNKP-226ENST00000636840 MADDQ8WXG6 1647 aa12.39□□□□□ -0.43
PNKP-226ENST00000636840 KANK1Q14678 1352 aa12.39□□□□□ -0.43
PNKP-226ENST00000636840 ROCK1Q13464 1354 aa12.38□□□□□ -0.43
PNKP-226ENST00000636840 ZMYM3Q14202 1370 aa12.38□□□□□ -0.43
PNKP-226ENST00000636840 PLXNC1O60486 1568 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms