RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 ARHGAP5Q13017 1502 aa22.54■■□□□ 1.2
LIMS4-203ENST00000632758 TRHP20396 242 aaPredicted RBP22.54■■□□□ 1.2
LIMS4-203ENST00000632758 CDC42BPBQ9Y5S2 1711 aa22.53■■□□□ 1.2
LIMS4-203ENST00000632758 PREX2Q70Z35 1606 aa22.52■■□□□ 1.2
LIMS4-203ENST00000632758 ITSN2Q9NZM3 1697 aa22.52■■□□□ 1.2
LIMS4-203ENST00000632758 MYO5CQ9NQX4 1742 aa22.52■■□□□ 1.19
LIMS4-203ENST00000632758 PTPN23Q9H3S7 1636 aa22.5■■□□□ 1.19
LIMS4-203ENST00000632758 MAP3K4Q9Y6R4 1608 aa22.5■■□□□ 1.19
LIMS4-203ENST00000632758 TCOF1Q13428 1488 aaKnown RBP22.5■■□□□ 1.19
LIMS4-203ENST00000632758 ITGAEP38570 1179 aa22.49■■□□□ 1.19
LIMS4-203ENST00000632758 FANCAO15360 1455 aa22.48■■□□□ 1.19
LIMS4-203ENST00000632758 KIF13AQ9H1H9 1805 aa22.48■■□□□ 1.19
LIMS4-203ENST00000632758 HNRNPMP52272 730 aaKnown RBP eCLIP22.48■■□□□ 1.19
LIMS4-203ENST00000632758 PCGF6Q9BYE7 350 aa22.48■■□□□ 1.19
LIMS4-203ENST00000632758 ARAP3Q8WWN8 1544 aa22.48■■□□□ 1.19
LIMS4-203ENST00000632758 CAMSAP2Q08AD1 1489 aa22.47■■□□□ 1.19
LIMS4-203ENST00000632758 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.47■■□□□ 1.19
LIMS4-203ENST00000632758 SAMD9LQ8IVG5 1584 aa22.45■■□□□ 1.18
LIMS4-203ENST00000632758 AKNAQ7Z591 1439 aa22.43■■□□□ 1.18
LIMS4-203ENST00000632758 ARHGEF12Q9NZN5 1544 aa22.42■■□□□ 1.18
LIMS4-203ENST00000632758 MBD5Q9P267 1494 aa22.4■■□□□ 1.18
LIMS4-203ENST00000632758 TSPOAP1O95153 1857 aa22.4■■□□□ 1.18
LIMS4-203ENST00000632758 PTPRKQ15262 1439 aa22.39■■□□□ 1.17
LIMS4-203ENST00000632758 KIAA1107Q9UPP5 1409 aa22.39■■□□□ 1.17
LIMS4-203ENST00000632758 PPRC1Q5VV67 1664 aaKnown RBP22.39■■□□□ 1.17
LIMS4-203ENST00000632758 ABCC5O15440 1437 aa22.38■■□□□ 1.17
LIMS4-203ENST00000632758 SCAPERQ9BY12 1400 aa22.38■■□□□ 1.17
LIMS4-203ENST00000632758 NEO1Q92859 1461 aa22.38■■□□□ 1.17
LIMS4-203ENST00000632758 ADGRL1O94910 1474 aa22.37■■□□□ 1.17
LIMS4-203ENST00000632758 PLEKHH2Q8IVE3 1493 aa22.37■■□□□ 1.17
LIMS4-203ENST00000632758 SYCP2Q9BX26 1530 aa22.37■■□□□ 1.17
LIMS4-203ENST00000632758 CHIC2Q9UKJ5 165 aa22.36■■□□□ 1.17
LIMS4-203ENST00000632758 ABCC1P33527 1531 aa22.36■■□□□ 1.17
LIMS4-203ENST00000632758 DAPK1P53355 1430 aa22.35■■□□□ 1.17
LIMS4-203ENST00000632758 TRAPPC8Q9Y2L5 1435 aa22.35■■□□□ 1.17
LIMS4-203ENST00000632758 AFAP1Q8N556 730 aa22.35■■□□□ 1.17
LIMS4-203ENST00000632758 TEX14Q8IWB6 1497 aa22.35■■□□□ 1.17
LIMS4-203ENST00000632758 RSPH4AQ5TD94 716 aa22.33■■□□□ 1.17
LIMS4-203ENST00000632758 CFAP74Q9C0B2 1584 aa22.31■■□□□ 1.16
LIMS4-203ENST00000632758 RAPGEF3O95398 923 aa22.31■■□□□ 1.16
LIMS4-203ENST00000632758 TSPY4P0CV99 314 aa22.31■■□□□ 1.16
LIMS4-203ENST00000632758 TSPY10P0CW01 314 aa22.31■■□□□ 1.16
LIMS4-203ENST00000632758 DNMT1P26358 1616 aaKnown RBP22.31■■□□□ 1.16
LIMS4-203ENST00000632758 CCDC141Q6ZP82 1450 aa22.3■■□□□ 1.16
LIMS4-203ENST00000632758 ARHGEF5Q12774 1597 aa22.29■■□□□ 1.16
LIMS4-203ENST00000632758 DENND4BO75064 1496 aaPredicted RBP22.27■■□□□ 1.16
LIMS4-203ENST00000632758 COL17A1Q9UMD9 1497 aaPredicted RBP22.26■■□□□ 1.15
LIMS4-203ENST00000632758 RRP7BPQ9NSQ0 103 aa22.25■■□□□ 1.15
LIMS4-203ENST00000632758 C9orf84Q5VXU9 1444 aa22.24■■□□□ 1.15
LIMS4-203ENST00000632758 POGZQ7Z3K3 1410 aa22.24■■□□□ 1.15
LIMS4-203ENST00000632758 SPAG9O60271 1321 aaKnown RBP22.24■■□□□ 1.15
LIMS4-203ENST00000632758 ZNF518AQ6AHZ1 1483 aa22.22■■□□□ 1.15
LIMS4-203ENST00000632758 SHANK2Q9UPX8 1470 aa22.21■■□□□ 1.15
LIMS4-203ENST00000632758 MYT1LQ9UL68 1186 aa22.21■■□□□ 1.15
LIMS4-203ENST00000632758 NCOA1Q15788 1441 aa22.19■■□□□ 1.14
LIMS4-203ENST00000632758 CROCC2H7BZ55 1655 aa22.19■■□□□ 1.14
LIMS4-203ENST00000632758 ROCK1Q13464 1354 aa22.19■■□□□ 1.14
LIMS4-203ENST00000632758 ANKRD30AQ9BXX3 1397 aa22.17■■□□□ 1.14
LIMS4-203ENST00000632758 ADGRL2O95490 1459 aa22.17■■□□□ 1.14
LIMS4-203ENST00000632758 RTEL1-TNFRSF6BF6WH68 1400 aa22.16■■□□□ 1.14
LIMS4-203ENST00000632758 FRMPD1Q5SYB0 1578 aa22.16■■□□□ 1.14
LIMS4-203ENST00000632758 MAST1Q9Y2H9 1570 aa22.16■■□□□ 1.14
LIMS4-203ENST00000632758 KDM5CP41229 1560 aa22.15■■□□□ 1.14
LIMS4-203ENST00000632758 NAIPQ13075 1403 aa22.15■■□□□ 1.14
LIMS4-203ENST00000632758 RICTORQ6R327 1708 aa22.14■■□□□ 1.14
LIMS4-203ENST00000632758 MLH3Q9UHC1 1453 aa22.13■■□□□ 1.13
LIMS4-203ENST00000632758 HFM1A2PYH4 1435 aa22.13■■□□□ 1.13
LIMS4-203ENST00000632758 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
LIMS4-203ENST00000632758 ZFYVE16Q7Z3T8 1539 aa22.13■■□□□ 1.13
LIMS4-203ENST00000632758 KIF15Q9NS87 1388 aa22.12■■□□□ 1.13
LIMS4-203ENST00000632758 ATP7AQ04656 1500 aa22.11■■□□□ 1.13
LIMS4-203ENST00000632758 INO80Q9ULG1 1556 aaPredicted RBP22.1■■□□□ 1.13
LIMS4-203ENST00000632758 YEATS2Q9ULM3 1422 aa22.09■■□□□ 1.13
LIMS4-203ENST00000632758 KIDINS220Q9ULH0 1771 aa22.08■■□□□ 1.13
LIMS4-203ENST00000632758 ADGBQ8N7X0 1667 aa22.08■■□□□ 1.13
LIMS4-203ENST00000632758 RAB3GAP2Q9H2M9 1393 aa22.08■■□□□ 1.13
LIMS4-203ENST00000632758 HECW2Q9P2P5 1572 aa22.07■■□□□ 1.12
LIMS4-203ENST00000632758 KDM6BO15054 1643 aa22.07■■□□□ 1.12
LIMS4-203ENST00000632758 ZMYM4Q5VZL5 1548 aa22.06■■□□□ 1.12
LIMS4-203ENST00000632758 PLXNC1O60486 1568 aa22.05■■□□□ 1.12
LIMS4-203ENST00000632758 ANKRD50Q9ULJ7 1429 aa22.05■■□□□ 1.12
LIMS4-203ENST00000632758 MAGI2Q86UL8 1455 aa22.04■■□□□ 1.12
LIMS4-203ENST00000632758 DHX29Q7Z478 1369 aaKnown RBP22.02■■□□□ 1.12
LIMS4-203ENST00000632758 DUOX2Q9NRD8 1548 aa22.01■■□□□ 1.11
LIMS4-203ENST00000632758 ABCA6Q8N139 1617 aa22.01■■□□□ 1.11
LIMS4-203ENST00000632758 HRCP23327 699 aa22■■□□□ 1.11
LIMS4-203ENST00000632758 GCC2Q8IWJ2 1684 aa22■■□□□ 1.11
LIMS4-203ENST00000632758 A2MP01023 1474 aa21.99■■□□□ 1.11
LIMS4-203ENST00000632758 DIP2CQ9Y2E4 1556 aa21.99■■□□□ 1.11
LIMS4-203ENST00000632758 ATP10AO60312 1499 aa21.97■■□□□ 1.11
LIMS4-203ENST00000632758 KIF3BO15066 747 aa21.96■■□□□ 1.11
LIMS4-203ENST00000632758 ERBINQ96RT1 1412 aa21.96■■□□□ 1.11
LIMS4-203ENST00000632758 TRIM52Q96A61 297 aa21.95■■□□□ 1.11
LIMS4-203ENST00000632758 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.92■■□□□ 1.1
LIMS4-203ENST00000632758 ARHGEF40Q8TER5 1519 aa21.91■■□□□ 1.1
LIMS4-203ENST00000632758 GGT6Q6P531 493 aa21.88■■□□□ 1.09
LIMS4-203ENST00000632758 NUP155O75694 1391 aa21.87■■□□□ 1.09
LIMS4-203ENST00000632758 REREQ9P2R6 1566 aa21.85■■□□□ 1.09
LIMS4-203ENST00000632758 DHX57Q6P158 1386 aaKnown RBP21.84■■□□□ 1.09
LIMS4-203ENST00000632758 MPHOSPH9Q99550 1183 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms