RNA–Protein interactions for RNA: ENST00000628646.2

SYNGAP1-207, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 4,264 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-207ENST00000628646 RAPGEF3O95398 923 aa18.02■□□□□ 0.48
SYNGAP1-207ENST00000628646 RIMBP3CA6NJZ7 1639 aa18.01■□□□□ 0.47
SYNGAP1-207ENST00000628646 RIMBP3BA6NNM3 1639 aa18.01■□□□□ 0.47
SYNGAP1-207ENST00000628646 RIMBP3Q9UFD9 1639 aa18.01■□□□□ 0.47
SYNGAP1-207ENST00000628646 LRRIQ1Q96JM4 1722 aa18.01■□□□□ 0.47
SYNGAP1-207ENST00000628646 WDR7Q9Y4E6 1490 aa18.01■□□□□ 0.47
SYNGAP1-207ENST00000628646 ZNF316A6NFI3 1004 aaPredicted RBP17.99■□□□□ 0.47
SYNGAP1-207ENST00000628646 CHGAP10645 457 aaKnown RBP17.99■□□□□ 0.47
SYNGAP1-207ENST00000628646 FGD6Q6ZV73 1430 aa17.99■□□□□ 0.47
SYNGAP1-207ENST00000628646 CLSPNQ9HAW4 1339 aa17.98■□□□□ 0.47
SYNGAP1-207ENST00000628646 KIF3BO15066 747 aa17.97■□□□□ 0.47
SYNGAP1-207ENST00000628646 SLC4A1APQ9BWU0 796 aaKnown RBP17.97■□□□□ 0.47
SYNGAP1-207ENST00000628646 STAG3Q9UJ98 1225 aa17.96■□□□□ 0.47
SYNGAP1-207ENST00000628646 SCAF1Q9H7N4 1312 aaKnown RBP17.96■□□□□ 0.47
SYNGAP1-207ENST00000628646 KIF14Q15058 1648 aa17.96■□□□□ 0.46
SYNGAP1-207ENST00000628646 ANKRD30AQ9BXX3 1397 aa17.95■□□□□ 0.46
SYNGAP1-207ENST00000628646 SCAPERQ9BY12 1400 aa17.94■□□□□ 0.46
SYNGAP1-207ENST00000628646 ABCA8O94911 1581 aa17.94■□□□□ 0.46
SYNGAP1-207ENST00000628646 SUPT6HQ7KZ85 1726 aaKnown RBP17.93■□□□□ 0.46
SYNGAP1-207ENST00000628646 UHRF1BP1LA0JNW5 1464 aa17.92■□□□□ 0.46
SYNGAP1-207ENST00000628646 MAPKBP1O60336 1514 aa17.91■□□□□ 0.46
SYNGAP1-207ENST00000628646 SHROOM2Q13796 1616 aa17.91■□□□□ 0.46
SYNGAP1-207ENST00000628646 ZNF326Q5BKZ1 582 aaKnown RBP17.9■□□□□ 0.46
SYNGAP1-207ENST00000628646 BCANQ96GW7 911 aa17.9■□□□□ 0.46
SYNGAP1-207ENST00000628646 KDM5BQ9UGL1 1544 aa17.9■□□□□ 0.46
SYNGAP1-207ENST00000628646 FANCAO15360 1455 aa17.88■□□□□ 0.45
SYNGAP1-207ENST00000628646 ADGRL1O94910 1474 aa17.86■□□□□ 0.45
SYNGAP1-207ENST00000628646 MIA2Q96PC5 1412 aa17.86■□□□□ 0.45
SYNGAP1-207ENST00000628646 KANK1Q14678 1352 aa17.85■□□□□ 0.45
SYNGAP1-207ENST00000628646 RAB3GAP2Q9H2M9 1393 aa17.84■□□□□ 0.45
SYNGAP1-207ENST00000628646 GPATCH8Q9UKJ3 1502 aaKnown RBP17.84■□□□□ 0.45
SYNGAP1-207ENST00000628646 PLEKHH2Q8IVE3 1493 aa17.84■□□□□ 0.45
SYNGAP1-207ENST00000628646 PLCH2O75038 1416 aa17.83■□□□□ 0.45
SYNGAP1-207ENST00000628646 AKNAQ7Z591 1439 aa17.83■□□□□ 0.44
SYNGAP1-207ENST00000628646 ZCCHC11Q5TAX3 1644 aaKnown RBP17.82■□□□□ 0.44
SYNGAP1-207ENST00000628646 WASHC2CQ9Y4E1 1318 aa17.82■□□□□ 0.44
SYNGAP1-207ENST00000628646 SENP3Q9H4L4 574 aaPredicted RBP17.81■□□□□ 0.44
SYNGAP1-207ENST00000628646 ADCY10Q96PN6 1610 aa17.81■□□□□ 0.44
SYNGAP1-207ENST00000628646 NUP155O75694 1391 aa17.81■□□□□ 0.44
SYNGAP1-207ENST00000628646 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.81■□□□□ 0.444e-6■■■■□ 23.1
SYNGAP1-207ENST00000628646 KIF15Q9NS87 1388 aa17.81■□□□□ 0.44
SYNGAP1-207ENST00000628646 SETD5Q9C0A6 1442 aa17.81■□□□□ 0.44
SYNGAP1-207ENST00000628646 ACIN1Q9UKV3 1341 aaKnown RBP17.8■□□□□ 0.44
SYNGAP1-207ENST00000628646 TEX14Q8IWB6 1497 aa17.8■□□□□ 0.44
SYNGAP1-207ENST00000628646 DENND4BO75064 1496 aaPredicted RBP17.78■□□□□ 0.44
SYNGAP1-207ENST00000628646 CAMSAP2Q08AD1 1489 aa17.78■□□□□ 0.44
SYNGAP1-207ENST00000628646 C9orf84Q5VXU9 1444 aa17.76■□□□□ 0.43
SYNGAP1-207ENST00000628646 MAGI3Q5TCQ9 1506 aa17.76■□□□□ 0.43
SYNGAP1-207ENST00000628646 FOXD1Q16676 465 aa17.75■□□□□ 0.43
SYNGAP1-207ENST00000628646 RGL3Q3MIN7 710 aa17.75■□□□□ 0.43
SYNGAP1-207ENST00000628646 PKD2Q13563 968 aa17.75■□□□□ 0.43
SYNGAP1-207ENST00000628646 MIER1Q8N108 512 aa17.73■□□□□ 0.43
SYNGAP1-207ENST00000628646 CCDC141Q6ZP82 1450 aa17.72■□□□□ 0.43
SYNGAP1-207ENST00000628646 TSPOAP1O95153 1857 aa17.72■□□□□ 0.43
SYNGAP1-207ENST00000628646 DAPK1P53355 1430 aa17.72■□□□□ 0.43
SYNGAP1-207ENST00000628646 KDM2AQ9Y2K7 1162 aa17.72■□□□□ 0.43
SYNGAP1-207ENST00000628646 ABCC10Q5T3U5 1492 aa17.72■□□□□ 0.43
SYNGAP1-207ENST00000628646 PTPN23Q9H3S7 1636 aa17.71■□□□□ 0.43
SYNGAP1-207ENST00000628646 PTPRKQ15262 1439 aa17.71■□□□□ 0.42
SYNGAP1-207ENST00000628646 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.7■□□□□ 0.427e-8■□□□□ 9
SYNGAP1-207ENST00000628646 ANKRD50Q9ULJ7 1429 aa17.7■□□□□ 0.42
SYNGAP1-207ENST00000628646 POLR3GLQ9BT43 218 aa17.7■□□□□ 0.42
SYNGAP1-207ENST00000628646 PPP1R15AO75807 674 aaPredicted RBP17.69■□□□□ 0.42
SYNGAP1-207ENST00000628646 MPHOSPH9Q99550 1183 aa17.69■□□□□ 0.42
SYNGAP1-207ENST00000628646 TONSLQ96HA7 1378 aa17.69■□□□□ 0.42
SYNGAP1-207ENST00000628646 TRAPPC8Q9Y2L5 1435 aa17.68■□□□□ 0.42
SYNGAP1-207ENST00000628646 ABCC5O15440 1437 aa17.67■□□□□ 0.42
SYNGAP1-207ENST00000628646 SYCP2Q9BX26 1530 aa17.67■□□□□ 0.42
SYNGAP1-207ENST00000628646 ITSN2Q9NZM3 1697 aa17.65■□□□□ 0.42
SYNGAP1-207ENST00000628646 CENPBP07199 599 aaPredicted RBP17.65■□□□□ 0.42
SYNGAP1-207ENST00000628646 SIN3AQ96ST3 1273 aa17.64■□□□□ 0.41
SYNGAP1-207ENST00000628646 TTC37Q6PGP7 1564 aa17.63■□□□□ 0.41
SYNGAP1-207ENST00000628646 ZNF518AQ6AHZ1 1483 aa17.63■□□□□ 0.41
SYNGAP1-207ENST00000628646 KIAA1107Q9UPP5 1409 aa17.61■□□□□ 0.41
SYNGAP1-207ENST00000628646 HFM1A2PYH4 1435 aa17.6■□□□□ 0.41
SYNGAP1-207ENST00000628646 TCOF1Q13428 1488 aaKnown RBP17.59■□□□□ 0.41
SYNGAP1-207ENST00000628646 NEO1Q92859 1461 aa17.59■□□□□ 0.41
SYNGAP1-207ENST00000628646 POGZQ7Z3K3 1410 aa17.59■□□□□ 0.41
SYNGAP1-207ENST00000628646 MYO5CQ9NQX4 1742 aa17.58■□□□□ 0.4
SYNGAP1-207ENST00000628646 AEBP2Q6ZN18 517 aaPredicted RBP17.56■□□□□ 0.4
SYNGAP1-207ENST00000628646 NCOA1Q15788 1441 aa17.56■□□□□ 0.4
SYNGAP1-207ENST00000628646 NAIPQ13075 1403 aa17.56■□□□□ 0.4
SYNGAP1-207ENST00000628646 GCC2Q8IWJ2 1684 aa17.55■□□□□ 0.4
SYNGAP1-207ENST00000628646 ROCK1Q13464 1354 aa17.53■□□□□ 0.4
SYNGAP1-207ENST00000628646 GTF3C3Q9Y5Q9 886 aa17.52■□□□□ 0.4
SYNGAP1-207ENST00000628646 DHX29Q7Z478 1369 aaKnown RBP17.52■□□□□ 0.4
SYNGAP1-207ENST00000628646 NUTM2DQ5VT03 806 aaPredicted RBP17.51■□□□□ 0.39
SYNGAP1-207ENST00000628646 DCAF11Q8TEB1 546 aa17.51■□□□□ 0.39
SYNGAP1-207ENST00000628646 KDM6BO15054 1643 aa17.5■□□□□ 0.39
SYNGAP1-207ENST00000628646 CEBPAP49715 358 aaPredicted RBP17.5■□□□□ 0.39
SYNGAP1-207ENST00000628646 A2MP01023 1474 aa17.49■□□□□ 0.39
SYNGAP1-207ENST00000628646 HDGFP51858 240 aaKnown RBP17.48■□□□□ 0.39
SYNGAP1-207ENST00000628646 CNGB1Q14028 1251 aaPredicted RBP17.47■□□□□ 0.39
SYNGAP1-207ENST00000628646 DIP2BQ9P265 1576 aa17.47■□□□□ 0.39
SYNGAP1-207ENST00000628646 PREX2Q70Z35 1606 aa17.47■□□□□ 0.39
SYNGAP1-207ENST00000628646 ABCA9Q8IUA7 1624 aa17.47■□□□□ 0.39
SYNGAP1-207ENST00000628646 YEATS2Q9ULM3 1422 aa17.46■□□□□ 0.39
SYNGAP1-207ENST00000628646 CFAP74Q9C0B2 1584 aa17.46■□□□□ 0.39
SYNGAP1-207ENST00000628646 TIMELESSQ9UNS1 1208 aa17.46■□□□□ 0.39
SYNGAP1-207ENST00000628646 SAMD9LQ8IVG5 1584 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms