RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ADAMTSL3P82987 1691 aa28.47■■■□□ 2.15
CLN3-239ENST00000628023 TIAM1Q13009 1591 aa28.45■■■□□ 2.15
CLN3-239ENST00000628023 ARHGEF40Q8TER5 1519 aa28.45■■■□□ 2.15
CLN3-239ENST00000628023 EFCAB2Q5VUJ9 269 aa28.45■■■□□ 2.14
CLN3-239ENST00000628023 PTPRMP28827 1452 aa28.45■■■□□ 2.14
CLN3-239ENST00000628023 APLP2Q06481 763 aa28.44■■■□□ 2.14
CLN3-239ENST00000628023 EHBP1L1Q8N3D4 1523 aa28.43■■■□□ 2.14
CLN3-239ENST00000628023 BCORL1Q5H9F3 1711 aa28.43■■■□□ 2.14
CLN3-239ENST00000628023 SCAPERQ9BY12 1400 aa28.42■■■□□ 2.14
CLN3-239ENST00000628023 MAGI2Q86UL8 1455 aa28.41■■■□□ 2.14
CLN3-239ENST00000628023 ZMYM4Q5VZL5 1548 aa28.4■■■□□ 2.14
CLN3-239ENST00000628023 POGZQ7Z3K3 1410 aa28.4■■■□□ 2.14
CLN3-239ENST00000628023 ZFYVE16Q7Z3T8 1539 aa28.38■■■□□ 2.13
CLN3-239ENST00000628023 MYO5CQ9NQX4 1742 aa28.38■■■□□ 2.13
CLN3-239ENST00000628023 MAP3K1Q13233 1512 aa28.37■■■□□ 2.13
CLN3-239ENST00000628023 MADDQ8WXG6 1647 aa28.35■■■□□ 2.13
CLN3-239ENST00000628023 YEATS2Q9ULM3 1422 aa28.33■■■□□ 2.13
CLN3-239ENST00000628023 LRRC9Q6ZRR7 1453 aa28.33■■■□□ 2.13
CLN3-239ENST00000628023 ARHGAP5Q13017 1502 aa28.31■■■□□ 2.12
CLN3-239ENST00000628023 ILDR1Q86SU0 546 aaPredicted RBP28.3■■■□□ 2.12
CLN3-239ENST00000628023 SUPT6HQ7KZ85 1726 aaKnown RBP28.29■■■□□ 2.12
CLN3-239ENST00000628023 CCNB3Q8WWL7 1395 aa28.27■■■□□ 2.12
CLN3-239ENST00000628023 PREX2Q70Z35 1606 aa28.27■■■□□ 2.12
CLN3-239ENST00000628023 RIMS1Q86UR5 1692 aaKnown RBP28.26■■■□□ 2.12
CLN3-239ENST00000628023 KANK4Q5T7N3 995 aaPredicted RBP28.26■■■□□ 2.11
CLN3-239ENST00000628023 MLECQ14165 292 aa28.25■■■□□ 2.11
CLN3-239ENST00000628023 MYT1LQ9UL68 1186 aa28.25■■■□□ 2.11
CLN3-239ENST00000628023 ATP10AO60312 1499 aa28.25■■■□□ 2.11
CLN3-239ENST00000628023 ZNF518AQ6AHZ1 1483 aa28.25■■■□□ 2.11
CLN3-239ENST00000628023 CDC42BPAQ5VT25 1732 aa28.23■■■□□ 2.11
CLN3-239ENST00000628023 NCOA2Q15596 1464 aa28.23■■■□□ 2.11
CLN3-239ENST00000628023 CDC42BPBQ9Y5S2 1711 aa28.21■■■□□ 2.11
CLN3-239ENST00000628023 PLPPR3Q6T4P5 718 aa28.21■■■□□ 2.11
CLN3-239ENST00000628023 GPATCH8Q9UKJ3 1502 aaKnown RBP28.21■■■□□ 2.11
CLN3-239ENST00000628023 C9orf84Q5VXU9 1444 aa28.2■■■□□ 2.11
CLN3-239ENST00000628023 AFAP1Q8N556 730 aa28.2■■■□□ 2.1
CLN3-239ENST00000628023 ITSN2Q9NZM3 1697 aa28.18■■■□□ 2.1
CLN3-239ENST00000628023 CFDP1Q9UEE9 299 aaPredicted RBP28.16■■■□□ 2.1
CLN3-239ENST00000628023 SIGLEC1Q9BZZ2 1709 aa28.15■■■□□ 2.1
CLN3-239ENST00000628023 ZNF777Q9ULD5 760 aaPredicted RBP28.15■■■□□ 2.1
CLN3-239ENST00000628023 LMTK3Q96Q04 1460 aa28.14■■■□□ 2.09
CLN3-239ENST00000628023 KDM5CP41229 1560 aa28.13■■■□□ 2.09
CLN3-239ENST00000628023 FER1L4A9Z1Z3 1794 aa28.12■■■□□ 2.09
CLN3-239ENST00000628023 ABCC1P33527 1531 aa28.08■■■□□ 2.09
CLN3-239ENST00000628023 ARHGEF12Q9NZN5 1544 aa28.08■■■□□ 2.09
CLN3-239ENST00000628023 SAMD9LQ8IVG5 1584 aa28.07■■■□□ 2.08
CLN3-239ENST00000628023 MLH3Q9UHC1 1453 aa28.07■■■□□ 2.08
CLN3-239ENST00000628023 PLEKHH2Q8IVE3 1493 aa28.04■■■□□ 2.08
CLN3-239ENST00000628023 TRAPPC8Q9Y2L5 1435 aa28.04■■■□□ 2.08
CLN3-239ENST00000628023 HSPA2P54652 639 aa28.03■■■□□ 2.08
CLN3-239ENST00000628023 DIP2CQ9Y2E4 1556 aa28.03■■■□□ 2.08
CLN3-239ENST00000628023 MYOM3Q5VTT5 1437 aa28.02■■■□□ 2.08
CLN3-239ENST00000628023 SYCP2Q9BX26 1530 aa28.02■■■□□ 2.08
CLN3-239ENST00000628023 ESF1Q9H501 851 aaKnown RBP28.01■■■□□ 2.07
CLN3-239ENST00000628023 REREQ9P2R6 1566 aa28■■■□□ 2.07
CLN3-239ENST00000628023 ZNF644Q9H582 1327 aaPredicted RBP27.98■■■□□ 2.07
CLN3-239ENST00000628023 PPARGC1BQ86YN6 1023 aaKnown RBP27.98■■■□□ 2.07
CLN3-239ENST00000628023 CAMSAP2Q08AD1 1489 aa27.97■■■□□ 2.07
CLN3-239ENST00000628023 CEBPAP49715 358 aaPredicted RBP27.97■■■□□ 2.07
CLN3-239ENST00000628023 FBXO41Q8TF61 875 aa27.97■■■□□ 2.07
CLN3-239ENST00000628023 KIAA1107Q9UPP5 1409 aa27.97■■■□□ 2.07
CLN3-239ENST00000628023 ABCA6Q8N139 1617 aa27.96■■■□□ 2.07
CLN3-239ENST00000628023 MIA2Q96PC5 1412 aa27.96■■■□□ 2.07
CLN3-239ENST00000628023 HNRNPMP52272 730 aaKnown RBP eCLIP27.96■■■□□ 2.07
CLN3-239ENST00000628023 AGLP35573 1532 aa27.94■■■□□ 2.06
CLN3-239ENST00000628023 SPAG9O60271 1321 aaKnown RBP27.92■■■□□ 2.06
CLN3-239ENST00000628023 KIDINS220Q9ULH0 1771 aa27.91■■■□□ 2.06
CLN3-239ENST00000628023 PREX1Q8TCU6 1659 aa27.89■■■□□ 2.06
CLN3-239ENST00000628023 FGD6Q6ZV73 1430 aa27.89■■■□□ 2.06
CLN3-239ENST00000628023 SETD1BQ9UPS6 1966 aaKnown RBP27.88■■■□□ 2.05
CLN3-239ENST00000628023 PTPN23Q9H3S7 1636 aa27.86■■■□□ 2.05
CLN3-239ENST00000628023 UHRF1BP1Q6BDS2 1440 aa27.85■■■□□ 2.05
CLN3-239ENST00000628023 CCDC141Q6ZP82 1450 aa27.85■■■□□ 2.05
CLN3-239ENST00000628023 MBD5Q9P267 1494 aa27.85■■■□□ 2.05
CLN3-239ENST00000628023 CNTLNQ9NXG0 1405 aa27.84■■■□□ 2.05
CLN3-239ENST00000628023 DMRT2Q9Y5R5 561 aa27.82■■■□□ 2.04
CLN3-239ENST00000628023 RSPH4AQ5TD94 716 aa27.81■■■□□ 2.04
CLN3-239ENST00000628023 ARHGEF5Q12774 1597 aa27.81■■■□□ 2.04
CLN3-239ENST00000628023 ATP7AQ04656 1500 aa27.79■■■□□ 2.04
CLN3-239ENST00000628023 C3P01024 1663 aa27.78■■■□□ 2.04
CLN3-239ENST00000628023 TCOF1Q13428 1488 aaKnown RBP27.78■■■□□ 2.04
CLN3-239ENST00000628023 FAM50AQ14320 339 aaKnown RBP27.77■■■□□ 2.04
CLN3-239ENST00000628023 INO80Q9ULG1 1556 aaPredicted RBP27.77■■■□□ 2.04
CLN3-239ENST00000628023 TSPY4P0CV99 314 aa27.75■■■□□ 2.03
CLN3-239ENST00000628023 TSPY10P0CW01 314 aa27.75■■■□□ 2.03
CLN3-239ENST00000628023 A2MP01023 1474 aa27.74■■■□□ 2.03
CLN3-239ENST00000628023 CERKQ8TCT0 537 aa27.72■■■□□ 2.03
CLN3-239ENST00000628023 RTEL1-TNFRSF6BF6WH68 1400 aa27.7■■■□□ 2.03
CLN3-239ENST00000628023 ZMYM3Q14202 1370 aa27.69■■■□□ 2.02
CLN3-239ENST00000628023 DNMT1P26358 1616 aaKnown RBP27.68■■■□□ 2.02
CLN3-239ENST00000628023 GGT6Q6P531 493 aa27.68■■■□□ 2.02
CLN3-239ENST00000628023 MROH2AA6NES4 1674 aa27.68■■■□□ 2.02
CLN3-239ENST00000628023 DAPK1P53355 1430 aa27.67■■■□□ 2.02
CLN3-239ENST00000628023 ABCC5O15440 1437 aa27.67■■■□□ 2.02
CLN3-239ENST00000628023 NPATQ14207 1427 aa27.67■■■□□ 2.02
CLN3-239ENST00000628023 PLXNC1O60486 1568 aa27.66■■■□□ 2.02
CLN3-239ENST00000628023 PPP6R1Q9UPN7 881 aa27.66■■■□□ 2.02
CLN3-239ENST00000628023 CROCC2H7BZ55 1655 aa27.65■■■□□ 2.02
CLN3-239ENST00000628023 MAST1Q9Y2H9 1570 aa27.65■■■□□ 2.02
CLN3-239ENST00000628023 ADGBQ8N7X0 1667 aa27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms