RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 DENND4BO75064 1496 aaPredicted RBP14.73□□□□□ -0.05
PDLIM5-223ENST00000627587 KANK4Q5T7N3 995 aaPredicted RBP14.72□□□□□ -0.05
PDLIM5-223ENST00000627587 AKNAQ7Z591 1439 aa14.71□□□□□ -0.05
PDLIM5-223ENST00000627587 CFAP74Q9C0B2 1584 aa14.71□□□□□ -0.05
PDLIM5-223ENST00000627587 BCORL1Q5H9F3 1711 aa14.71□□□□□ -0.06
PDLIM5-223ENST00000627587 APLP2Q06481 763 aa14.69□□□□□ -0.06
PDLIM5-223ENST00000627587 FRMPD1Q5SYB0 1578 aa14.69□□□□□ -0.06
PDLIM5-223ENST00000627587 FANCAO15360 1455 aa14.68□□□□□ -0.06
PDLIM5-223ENST00000627587 POGZQ7Z3K3 1410 aa14.68□□□□□ -0.06
PDLIM5-223ENST00000627587 FBXO41Q8TF61 875 aa14.68□□□□□ -0.06
PDLIM5-223ENST00000627587 MAGI2Q86UL8 1455 aa14.67□□□□□ -0.06
PDLIM5-223ENST00000627587 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.66□□□□□ -0.06
PDLIM5-223ENST00000627587 ARHGEF40Q8TER5 1519 aa14.66□□□□□ -0.06
PDLIM5-223ENST00000627587 RICTORQ6R327 1708 aa14.66□□□□□ -0.06
PDLIM5-223ENST00000627587 CDK11AQ9UQ88 783 aaPredicted RBP14.65□□□□□ -0.06
PDLIM5-223ENST00000627587 LRRC9Q6ZRR7 1453 aa14.65□□□□□ -0.06
PDLIM5-223ENST00000627587 MADDQ8WXG6 1647 aa14.65□□□□□ -0.06
PDLIM5-223ENST00000627587 HECW1Q76N89 1606 aa14.64□□□□□ -0.07
PDLIM5-223ENST00000627587 ZMYM4Q5VZL5 1548 aa14.63□□□□□ -0.07
PDLIM5-223ENST00000627587 PLCH2O75038 1416 aa14.63□□□□□ -0.07
PDLIM5-223ENST00000627587 EFCAB2Q5VUJ9 269 aa14.61□□□□□ -0.07
PDLIM5-223ENST00000627587 ZFYVE16Q7Z3T8 1539 aa14.61□□□□□ -0.07
PDLIM5-223ENST00000627587 TTC37Q6PGP7 1564 aa14.6□□□□□ -0.07
PDLIM5-223ENST00000627587 SCAPERQ9BY12 1400 aa14.6□□□□□ -0.07
PDLIM5-223ENST00000627587 LMTK3Q96Q04 1460 aa14.6□□□□□ -0.07
PDLIM5-223ENST00000627587 RIMS1Q86UR5 1692 aaKnown RBP14.59□□□□□ -0.07
PDLIM5-223ENST00000627587 ATP1B4Q9UN42 357 aaPredicted RBP14.59□□□□□ -0.07
PDLIM5-223ENST00000627587 CDK13Q14004 1512 aaKnown RBP14.58□□□□□ -0.07
PDLIM5-223ENST00000627587 CCDC18Q5T9S5 1454 aa14.57□□□□□ -0.08
PDLIM5-223ENST00000627587 ATP10AO60312 1499 aa14.56□□□□□ -0.08
PDLIM5-223ENST00000627587 YEATS2Q9ULM3 1422 aa14.56□□□□□ -0.08
PDLIM5-223ENST00000627587 RRBP1Q9P2E9 1410 aaKnown RBP14.55□□□□□ -0.08
PDLIM5-223ENST00000627587 MLECQ14165 292 aa14.53□□□□□ -0.08
PDLIM5-223ENST00000627587 MYO5CQ9NQX4 1742 aa14.53□□□□□ -0.08
PDLIM5-223ENST00000627587 C9orf84Q5VXU9 1444 aa14.53□□□□□ -0.08
PDLIM5-223ENST00000627587 EHBP1L1Q8N3D4 1523 aa14.53□□□□□ -0.08
PDLIM5-223ENST00000627587 TROQ12816 1431 aaPredicted RBP14.52□□□□□ -0.09
PDLIM5-223ENST00000627587 SUPT6HQ7KZ85 1726 aaKnown RBP14.51□□□□□ -0.09
PDLIM5-223ENST00000627587 HSPA2P54652 639 aa14.5□□□□□ -0.09
PDLIM5-223ENST00000627587 FER1L4A9Z1Z3 1794 aa14.5□□□□□ -0.09
PDLIM5-223ENST00000627587 ZNF518AQ6AHZ1 1483 aa14.5□□□□□ -0.09
PDLIM5-223ENST00000627587 ARHGEF12Q9NZN5 1544 aa14.5□□□□□ -0.09
PDLIM5-223ENST00000627587 KIF14Q15058 1648 aa14.5□□□□□ -0.09
PDLIM5-223ENST00000627587 MTUS2Q5JR59 1369 aa14.49□□□□□ -0.09
PDLIM5-223ENST00000627587 DMRT2Q9Y5R5 561 aa14.48□□□□□ -0.09
PDLIM5-223ENST00000627587 SIGLEC1Q9BZZ2 1709 aa14.48□□□□□ -0.09
PDLIM5-223ENST00000627587 NCOA2Q15596 1464 aa14.47□□□□□ -0.09
PDLIM5-223ENST00000627587 MYT1LQ9UL68 1186 aa14.47□□□□□ -0.09
PDLIM5-223ENST00000627587 ARHGAP5Q13017 1502 aa14.47□□□□□ -0.09
PDLIM5-223ENST00000627587 AFAP1Q8N556 730 aa14.46□□□□□ -0.09
PDLIM5-223ENST00000627587 CERKQ8TCT0 537 aa14.46□□□□□ -0.09
PDLIM5-223ENST00000627587 CCNB3Q8WWL7 1395 aa14.46□□□□□ -0.09
PDLIM5-223ENST00000627587 SETD1BQ9UPS6 1966 aaKnown RBP14.45□□□□□ -0.1
PDLIM5-223ENST00000627587 KDM5CP41229 1560 aa14.44□□□□□ -0.1
PDLIM5-223ENST00000627587 MLH3Q9UHC1 1453 aa14.44□□□□□ -0.1
PDLIM5-223ENST00000627587 PREX1Q8TCU6 1659 aa14.44□□□□□ -0.1
PDLIM5-223ENST00000627587 REREQ9P2R6 1566 aa14.43□□□□□ -0.1
PDLIM5-223ENST00000627587 ESF1Q9H501 851 aaKnown RBP14.43□□□□□ -0.1
PDLIM5-223ENST00000627587 CEBPAP49715 358 aaPredicted RBP14.42□□□□□ -0.1
PDLIM5-223ENST00000627587 FGD6Q6ZV73 1430 aa14.41□□□□□ -0.1
PDLIM5-223ENST00000627587 CDC42BPBQ9Y5S2 1711 aa14.4□□□□□ -0.1
PDLIM5-223ENST00000627587 MYOM3Q5VTT5 1437 aa14.4□□□□□ -0.1
PDLIM5-223ENST00000627587 UHRF1BP1Q6BDS2 1440 aa14.4□□□□□ -0.1
PDLIM5-223ENST00000627587 AGLP35573 1532 aa14.4□□□□□ -0.1
PDLIM5-223ENST00000627587 DIP2CQ9Y2E4 1556 aa14.39□□□□□ -0.11
PDLIM5-223ENST00000627587 PREX2Q70Z35 1606 aa14.37□□□□□ -0.11
PDLIM5-223ENST00000627587 PTPN23Q9H3S7 1636 aa14.37□□□□□ -0.11
PDLIM5-223ENST00000627587 CNTLNQ9NXG0 1405 aa14.36□□□□□ -0.11
PDLIM5-223ENST00000627587 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.36□□□□□ -0.11
PDLIM5-223ENST00000627587 HRCP23327 699 aa14.36□□□□□ -0.11
PDLIM5-223ENST00000627587 ABCC1P33527 1531 aa14.36□□□□□ -0.11
PDLIM5-223ENST00000627587 TRAPPC8Q9Y2L5 1435 aa14.36□□□□□ -0.11
PDLIM5-223ENST00000627587 ITSN2Q9NZM3 1697 aa14.34□□□□□ -0.11
PDLIM5-223ENST00000627587 ABCA6Q8N139 1617 aa14.34□□□□□ -0.11
PDLIM5-223ENST00000627587 PTPRTO14522 1441 aa14.34□□□□□ -0.11
PDLIM5-223ENST00000627587 TCOF1Q13428 1488 aaKnown RBP14.34□□□□□ -0.11
PDLIM5-223ENST00000627587 CDC42BPAQ5VT25 1732 aa14.33□□□□□ -0.11
PDLIM5-223ENST00000627587 STRCQ7RTU9 1775 aa14.33□□□□□ -0.12
PDLIM5-223ENST00000627587 C3P01024 1663 aa14.32□□□□□ -0.12
PDLIM5-223ENST00000627587 ZNF777Q9ULD5 760 aaPredicted RBP14.31□□□□□ -0.12
PDLIM5-223ENST00000627587 KIDINS220Q9ULH0 1771 aa14.31□□□□□ -0.12
PDLIM5-223ENST00000627587 MIA2Q96PC5 1412 aa14.31□□□□□ -0.12
PDLIM5-223ENST00000627587 PLEKHH2Q8IVE3 1493 aa14.31□□□□□ -0.12
PDLIM5-223ENST00000627587 SPAG9O60271 1321 aaKnown RBP14.3□□□□□ -0.12
PDLIM5-223ENST00000627587 FAM50AQ14320 339 aaKnown RBP14.3□□□□□ -0.12
PDLIM5-223ENST00000627587 GPATCH8Q9UKJ3 1502 aaKnown RBP14.3□□□□□ -0.12
PDLIM5-223ENST00000627587 PTPRKQ15262 1439 aa14.3□□□□□ -0.12
PDLIM5-223ENST00000627587 KIAA1107Q9UPP5 1409 aa14.3□□□□□ -0.12
PDLIM5-223ENST00000627587 NPATQ14207 1427 aa14.29□□□□□ -0.12
PDLIM5-223ENST00000627587 SAMD9LQ8IVG5 1584 aa14.28□□□□□ -0.12
PDLIM5-223ENST00000627587 CFDP1Q9UEE9 299 aaPredicted RBP14.28□□□□□ -0.12
PDLIM5-223ENST00000627587 ITGAEP38570 1179 aa14.27□□□□□ -0.12
PDLIM5-223ENST00000627587 HNRNPMP52272 730 aaKnown RBP eCLIP14.27□□□□□ -0.125e-6■■■□□ 18.5
PDLIM5-223ENST00000627587 MROH2AA6NES4 1674 aa14.27□□□□□ -0.13
PDLIM5-223ENST00000627587 ZMYM3Q14202 1370 aa14.26□□□□□ -0.13
PDLIM5-223ENST00000627587 IQSEC2Q5JU85 1478 aa14.25□□□□□ -0.13
PDLIM5-223ENST00000627587 NCOA1Q15788 1441 aa14.24□□□□□ -0.13
PDLIM5-223ENST00000627587 SYCP2Q9BX26 1530 aa14.24□□□□□ -0.13
PDLIM5-223ENST00000627587 DNMT1P26358 1616 aaKnown RBP14.23□□□□□ -0.13
PDLIM5-223ENST00000627587 ZNF644Q9H582 1327 aaPredicted RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms