RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 CFDP1Q9UEE9 299 aaPredicted RBP28.6■■■□□ 2.17
CHRNA4-209ENST00000627000 CLASP1Q7Z460 1538 aa28.59■■■□□ 2.17
CHRNA4-209ENST00000627000 CAMSAP2Q08AD1 1489 aa28.58■■■□□ 2.17
CHRNA4-209ENST00000627000 ABCC10Q5T3U5 1492 aa28.55■■■□□ 2.16
CHRNA4-209ENST00000627000 CDC42BPAQ5VT25 1732 aa28.54■■■□□ 2.16
CHRNA4-209ENST00000627000 ZNF777Q9ULD5 760 aaPredicted RBP28.54■■■□□ 2.16
CHRNA4-209ENST00000627000 ROCK1Q13464 1354 aa28.5■■■□□ 2.15
CHRNA4-209ENST00000627000 TRIM52Q96A61 297 aa28.46■■■□□ 2.15
CHRNA4-209ENST00000627000 ABCC2Q92887 1545 aa28.45■■■□□ 2.15
CHRNA4-209ENST00000627000 DENND4BO75064 1496 aaPredicted RBP28.44■■■□□ 2.14
CHRNA4-209ENST00000627000 CROCC2H7BZ55 1655 aa28.42■■■□□ 2.14
CHRNA4-209ENST00000627000 TIMELESSQ9UNS1 1208 aa28.41■■■□□ 2.14
CHRNA4-209ENST00000627000 ADGBQ8N7X0 1667 aa28.39■■■□□ 2.14
CHRNA4-209ENST00000627000 NCOA1Q15788 1441 aa28.35■■■□□ 2.13
CHRNA4-209ENST00000627000 MPHOSPH9Q99550 1183 aa28.34■■■□□ 2.13
CHRNA4-209ENST00000627000 PPP1R15AO75807 674 aaPredicted RBP28.34■■■□□ 2.13
CHRNA4-209ENST00000627000 CDC42BPBQ9Y5S2 1711 aa28.34■■■□□ 2.13
CHRNA4-209ENST00000627000 ADGRL2O95490 1459 aa28.33■■■□□ 2.13
CHRNA4-209ENST00000627000 TONSLQ96HA7 1378 aa28.33■■■□□ 2.13
CHRNA4-209ENST00000627000 PREX2Q70Z35 1606 aa28.32■■■□□ 2.12
CHRNA4-209ENST00000627000 TTC37Q6PGP7 1564 aa28.31■■■□□ 2.12
CHRNA4-209ENST00000627000 ZCCHC11Q5TAX3 1644 aaKnown RBP28.3■■■□□ 2.12
CHRNA4-209ENST00000627000 MIER1Q8N108 512 aa28.29■■■□□ 2.12
CHRNA4-209ENST00000627000 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.28■■■□□ 2.12
CHRNA4-209ENST00000627000 SAMD9LQ8IVG5 1584 aa28.28■■■□□ 2.12
CHRNA4-209ENST00000627000 UHRF1BP1LA0JNW5 1464 aa28.28■■■□□ 2.12
CHRNA4-209ENST00000627000 HNRNPMP52272 730 aaKnown RBP eCLIP28.27■■■□□ 2.12
CHRNA4-209ENST00000627000 FOXD1Q16676 465 aa28.27■■■□□ 2.12
CHRNA4-209ENST00000627000 ANKRD30AQ9BXX3 1397 aa28.26■■■□□ 2.11
CHRNA4-209ENST00000627000 C9orf84Q5VXU9 1444 aa28.24■■■□□ 2.11
CHRNA4-209ENST00000627000 SHANK2Q9UPX8 1470 aa28.24■■■□□ 2.11
CHRNA4-209ENST00000627000 KDM5BQ9UGL1 1544 aa28.24■■■□□ 2.11
CHRNA4-209ENST00000627000 MBD5Q9P267 1494 aa28.23■■■□□ 2.11
CHRNA4-209ENST00000627000 KCNH8Q96L42 1107 aa28.23■■■□□ 2.11
CHRNA4-209ENST00000627000 ARHGEF5Q12774 1597 aa28.22■■■□□ 2.11
CHRNA4-209ENST00000627000 ACIN1Q9UKV3 1341 aaKnown RBP28.2■■■□□ 2.11
CHRNA4-209ENST00000627000 ARHGAP5Q13017 1502 aa28.19■■■□□ 2.1
CHRNA4-209ENST00000627000 MYO5CQ9NQX4 1742 aa28.19■■■□□ 2.1
CHRNA4-209ENST00000627000 TSPY4P0CV99 314 aa28.18■■■□□ 2.1
CHRNA4-209ENST00000627000 TSPY10P0CW01 314 aa28.18■■■□□ 2.1
CHRNA4-209ENST00000627000 SLC4A1APQ9BWU0 796 aaKnown RBP28.18■■■□□ 2.1
CHRNA4-209ENST00000627000 PZPP20742 1482 aa28.18■■■□□ 2.1
CHRNA4-209ENST00000627000 ANKRD50Q9ULJ7 1429 aa28.17■■■□□ 2.1
CHRNA4-209ENST00000627000 CCDC141Q6ZP82 1450 aa28.15■■■□□ 2.1
CHRNA4-209ENST00000627000 SYCP2Q9BX26 1530 aa28.14■■■□□ 2.1
CHRNA4-209ENST00000627000 ANKRD30BQ9BXX2 1392 aa28.14■■■□□ 2.1
CHRNA4-209ENST00000627000 KIF15Q9NS87 1388 aa28.09■■■□□ 2.09
CHRNA4-209ENST00000627000 HIRIP3Q9BW71 556 aaPredicted RBP28.09■■■□□ 2.09
CHRNA4-209ENST00000627000 OSCARQ8IYS5 282 aa28.07■■■□□ 2.08
CHRNA4-209ENST00000627000 RSPH4AQ5TD94 716 aa28.06■■■□□ 2.08
CHRNA4-209ENST00000627000 RPRD2Q5VT52 1461 aaKnown RBP28.05■■■□□ 2.08
CHRNA4-209ENST00000627000 PLCH2O75038 1416 aa28.05■■■□□ 2.08
CHRNA4-209ENST00000627000 L3MBTL2Q969R5 705 aa28.03■■■□□ 2.08
CHRNA4-209ENST00000627000 ARHGEF12Q9NZN5 1544 aa28.02■■■□□ 2.08
CHRNA4-209ENST00000627000 KIAA1107Q9UPP5 1409 aa28.01■■■□□ 2.08
CHRNA4-209ENST00000627000 MAST1Q9Y2H9 1570 aa28■■■□□ 2.07
CHRNA4-209ENST00000627000 PLEKHH2Q8IVE3 1493 aa28■■■□□ 2.07
CHRNA4-209ENST00000627000 NUP155O75694 1391 aa28■■■□□ 2.07
CHRNA4-209ENST00000627000 PKD2Q13563 968 aa28■■■□□ 2.07
CHRNA4-209ENST00000627000 WDR7Q9Y4E6 1490 aa27.98■■■□□ 2.07
CHRNA4-209ENST00000627000 EFCAB2Q5VUJ9 269 aa27.97■■■□□ 2.07
CHRNA4-209ENST00000627000 YTHDC1Q96MU7 727 aaKnown RBP27.96■■■□□ 2.07
CHRNA4-209ENST00000627000 TEX14Q8IWB6 1497 aa27.96■■■□□ 2.07
CHRNA4-209ENST00000627000 KDM5DQ9BY66 1539 aa27.96■■■□□ 2.07
CHRNA4-209ENST00000627000 ABCC1P33527 1531 aa27.93■■■□□ 2.06
CHRNA4-209ENST00000627000 DDX10Q13206 875 aaKnown RBP27.93■■■□□ 2.06
CHRNA4-209ENST00000627000 PELP1Q8IZL8 1130 aaKnown RBP27.92■■■□□ 2.06
CHRNA4-209ENST00000627000 PLXNC1O60486 1568 aa27.9■■■□□ 2.06
CHRNA4-209ENST00000627000 CENPBP07199 599 aaPredicted RBP27.89■■■□□ 2.05
CHRNA4-209ENST00000627000 TRAPPC8Q9Y2L5 1435 aa27.88■■■□□ 2.05
CHRNA4-209ENST00000627000 ASXL2Q76L83 1435 aa27.87■■■□□ 2.05
CHRNA4-209ENST00000627000 ARAP3Q8WWN8 1544 aa27.86■■■□□ 2.05
CHRNA4-209ENST00000627000 NBPF8Q3BBV2 869 aa27.86■■■□□ 2.05
CHRNA4-209ENST00000627000 ABCA9Q8IUA7 1624 aa27.85■■■□□ 2.05
CHRNA4-209ENST00000627000 FAM135AQ9P2D6 1515 aa27.83■■■□□ 2.05
CHRNA4-209ENST00000627000 UNC13BO14795 1591 aa27.81■■■□□ 2.04
CHRNA4-209ENST00000627000 HSPA5P11021 654 aaKnown RBP27.81■■■□□ 2.04
CHRNA4-209ENST00000627000 DUOX2Q9NRD8 1548 aa27.8■■■□□ 2.04
CHRNA4-209ENST00000627000 FANCAO15360 1455 aa27.78■■■□□ 2.04
CHRNA4-209ENST00000627000 SCAF1Q9H7N4 1312 aaKnown RBP27.78■■■□□ 2.04
CHRNA4-209ENST00000627000 AFAP1Q8N556 730 aa27.78■■■□□ 2.04
CHRNA4-209ENST00000627000 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.77■■■□□ 2.04
CHRNA4-209ENST00000627000 NPM1P06748 294 aaKnown RBP eCLIP27.75■■■□□ 2.03
CHRNA4-209ENST00000627000 EIF4G2P78344 907 aaKnown RBP eCLIP27.75■■■□□ 2.03
CHRNA4-209ENST00000627000 SPAG9O60271 1321 aaKnown RBP27.74■■■□□ 2.03
CHRNA4-209ENST00000627000 ERBINQ96RT1 1412 aa27.73■■■□□ 2.03
CHRNA4-209ENST00000627000 ZFYVE16Q7Z3T8 1539 aa27.72■■■□□ 2.03
CHRNA4-209ENST00000627000 IQGAP3Q86VI3 1631 aa27.71■■■□□ 2.03
CHRNA4-209ENST00000627000 RTEL1-TNFRSF6BF6WH68 1400 aa27.68■■■□□ 2.02
CHRNA4-209ENST00000627000 ADGRL1O94910 1474 aa27.68■■■□□ 2.02
CHRNA4-209ENST00000627000 MAGI2Q86UL8 1455 aa27.68■■■□□ 2.02
CHRNA4-209ENST00000627000 SCAPERQ9BY12 1400 aa27.66■■■□□ 2.02
CHRNA4-209ENST00000627000 ZNF326Q5BKZ1 582 aaKnown RBP27.66■■■□□ 2.02
CHRNA4-209ENST00000627000 WASHC2AQ641Q2 1341 aa27.66■■■□□ 2.02
CHRNA4-209ENST00000627000 INO80Q9ULG1 1556 aaPredicted RBP27.63■■■□□ 2.01
CHRNA4-209ENST00000627000 ATP7AQ04656 1500 aa27.63■■■□□ 2.01
CHRNA4-209ENST00000627000 PLA2R1Q13018 1463 aa27.63■■■□□ 2.01
CHRNA4-209ENST00000627000 SPATA31E1Q6ZUB1 1445 aa27.6■■■□□ 2.01
CHRNA4-209ENST00000627000 C11orf95C9JLR9 678 aaPredicted RBP27.59■■■□□ 2.01
CHRNA4-209ENST00000627000 CCDC144AA2RUR9 1427 aa27.58■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms