RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 TOP2BQ02880 1626 aa12.38□□□□□ -0.43
HDAC9-229ENST00000622668 EIF4G2P78344 907 aaKnown RBP eCLIP12.38□□□□□ -0.43
HDAC9-229ENST00000622668 DNAJC5Q9H3Z4 198 aa12.37□□□□□ -0.43
HDAC9-229ENST00000622668 CD109Q6YHK3 1445 aa12.36□□□□□ -0.43
HDAC9-229ENST00000622668 DIEXFQ68CQ4 756 aaKnown RBP12.36□□□□□ -0.43
HDAC9-229ENST00000622668 ARXQ96QS3 562 aa12.36□□□□□ -0.43
HDAC9-229ENST00000622668 SCAPERQ9BY12 1400 aa12.36□□□□□ -0.43
HDAC9-229ENST00000622668 DDX10Q13206 875 aaKnown RBP12.35□□□□□ -0.43
HDAC9-229ENST00000622668 CDCA8Q53HL2 280 aa12.35□□□□□ -0.43
HDAC9-229ENST00000622668 MPHOSPH9Q99550 1183 aa12.34□□□□□ -0.43
HDAC9-229ENST00000622668 SALL2Q9Y467 1007 aaPredicted RBP12.34□□□□□ -0.43
HDAC9-229ENST00000622668 ARHGAP5Q13017 1502 aa12.34□□□□□ -0.43
HDAC9-229ENST00000622668 TNNT2P45379 298 aaPredicted RBP12.33□□□□□ -0.44
HDAC9-229ENST00000622668 CANXP27824 592 aaKnown RBP12.33□□□□□ -0.44
HDAC9-229ENST00000622668 NGDNQ8NEJ9 315 aaKnown RBP12.32□□□□□ -0.44
HDAC9-229ENST00000622668 POGZQ7Z3K3 1410 aa12.31□□□□□ -0.44
HDAC9-229ENST00000622668 CSB-PGBD3P0DP91 1061 aa12.31□□□□□ -0.44
HDAC9-229ENST00000622668 PLB1Q6P1J6 1458 aa12.3□□□□□ -0.44
HDAC9-229ENST00000622668 ZNF316A6NFI3 1004 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-229ENST00000622668 TXNDC2Q86VQ3 553 aa12.29□□□□□ -0.44
HDAC9-229ENST00000622668 KNSTRNQ9Y448 316 aa12.29□□□□□ -0.44
HDAC9-229ENST00000622668 ZBTB47Q9UFB7 747 aaPredicted RBP12.29□□□□□ -0.44
HDAC9-229ENST00000622668 VGFO15240 615 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-229ENST00000622668 KIF15Q9NS87 1388 aa12.28□□□□□ -0.44
HDAC9-229ENST00000622668 TRAK1Q9UPV9 953 aa12.28□□□□□ -0.44
HDAC9-229ENST00000622668 CEBPAP49715 358 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-229ENST00000622668 WDR43Q15061 677 aaKnown RBP eCLIP12.28□□□□□ -0.44
HDAC9-229ENST00000622668 MEX3CQ5U5Q3 659 aaKnown RBP12.28□□□□□ -0.44
HDAC9-229ENST00000622668 THEMISQ8N1K5 641 aaPredicted RBP12.27□□□□□ -0.44
HDAC9-229ENST00000622668 PHF23Q9BUL5 403 aaPredicted RBP12.27□□□□□ -0.44
HDAC9-229ENST00000622668 SETD5Q9C0A6 1442 aa12.27□□□□□ -0.45
HDAC9-229ENST00000622668 PRXQ9BXM0 1461 aa12.27□□□□□ -0.45
HDAC9-229ENST00000622668 ERICH3Q5RHP9 1530 aa12.26□□□□□ -0.45
HDAC9-229ENST00000622668 ATF3P18847 181 aa12.26□□□□□ -0.45
HDAC9-229ENST00000622668 IQGAP2Q13576 1575 aa12.26□□□□□ -0.45
HDAC9-229ENST00000622668 PIP4K2BP78356 416 aa12.26□□□□□ -0.45
HDAC9-229ENST00000622668 CLSPNQ9HAW4 1339 aa12.26□□□□□ -0.45
HDAC9-229ENST00000622668 MYOM3Q5VTT5 1437 aa12.25□□□□□ -0.45
HDAC9-229ENST00000622668 PROSER2Q86WR7 435 aaPredicted RBP12.25□□□□□ -0.45
HDAC9-229ENST00000622668 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
HDAC9-229ENST00000622668 FAM9BQ8IZU0 186 aa12.24□□□□□ -0.45
HDAC9-229ENST00000622668 TROQ12816 1431 aaPredicted RBP12.24□□□□□ -0.45
HDAC9-229ENST00000622668 CASKIN1Q8WXD9 1431 aa12.23□□□□□ -0.45
HDAC9-229ENST00000622668 TMF1P82094 1093 aa12.23□□□□□ -0.45
HDAC9-229ENST00000622668 ANKLE2Q86XL3 938 aa12.23□□□□□ -0.45
HDAC9-229ENST00000622668 CFAP53Q96M91 514 aa12.23□□□□□ -0.45
HDAC9-229ENST00000622668 NPHP1O15259 732 aa12.22□□□□□ -0.45
HDAC9-229ENST00000622668 HDGFL2Q7Z4V5 671 aaPredicted RBP12.22□□□□□ -0.45
HDAC9-229ENST00000622668 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.22□□□□□ -0.45
HDAC9-229ENST00000622668 SLC26A8Q96RN1 970 aa12.21□□□□□ -0.46
HDAC9-229ENST00000622668 RAB3GAP2Q9H2M9 1393 aa12.2□□□□□ -0.46
HDAC9-229ENST00000622668 WDR62O43379 1518 aa12.2□□□□□ -0.46
HDAC9-229ENST00000622668 CCDC144AA2RUR9 1427 aa12.2□□□□□ -0.46
HDAC9-229ENST00000622668 U2SURPO15042 1029 aaKnown RBP12.19□□□□□ -0.46
HDAC9-229ENST00000622668 ARAP1Q96P48 1450 aa12.19□□□□□ -0.46
HDAC9-229ENST00000622668 ASXL2Q76L83 1435 aa12.18□□□□□ -0.46
HDAC9-229ENST00000622668 MINK1Q8N4C8 1332 aaPredicted RBP12.18□□□□□ -0.46
HDAC9-229ENST00000622668 NCOA2Q15596 1464 aa12.17□□□□□ -0.46
HDAC9-229ENST00000622668 CDK13Q14004 1512 aaKnown RBP12.16□□□□□ -0.46
HDAC9-229ENST00000622668 MRS2Q9HD23 443 aa12.16□□□□□ -0.46
HDAC9-229ENST00000622668 NEUROD2Q15784 382 aa12.16□□□□□ -0.46
HDAC9-229ENST00000622668 ARHGEF11O15085 1522 aa12.16□□□□□ -0.46
HDAC9-229ENST00000622668 SENP3-EIF4A1A0A087X0R7 540 aa12.16□□□□□ -0.46
HDAC9-229ENST00000622668 PSME1Q06323 249 aa12.16□□□□□ -0.46
HDAC9-229ENST00000622668 CC2D1BQ5T0F9 858 aaKnown RBP12.16□□□□□ -0.46
HDAC9-229ENST00000622668 LTV1Q96GA3 475 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-229ENST00000622668 ROCK2O75116 1388 aaKnown RBP12.15□□□□□ -0.46
HDAC9-229ENST00000622668 ANKRD50Q9ULJ7 1429 aa12.15□□□□□ -0.46
HDAC9-229ENST00000622668 NUDCQ9Y266 331 aa12.15□□□□□ -0.46
HDAC9-229ENST00000622668 ADGRL1O94910 1474 aa12.15□□□□□ -0.46
HDAC9-229ENST00000622668 EVA1CP58658 441 aa12.15□□□□□ -0.46
HDAC9-229ENST00000622668 HSPA2P54652 639 aa12.14□□□□□ -0.47
HDAC9-229ENST00000622668 EIF4G3O43432 1585 aaKnown RBP12.14□□□□□ -0.47
HDAC9-229ENST00000622668 EFCAB5A4FU69 1503 aa12.14□□□□□ -0.47
HDAC9-229ENST00000622668 L3MBTL2Q969R5 705 aa12.14□□□□□ -0.47
HDAC9-229ENST00000622668 FGD6Q6ZV73 1430 aa12.14□□□□□ -0.47
HDAC9-229ENST00000622668 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.14□□□□□ -0.47
HDAC9-229ENST00000622668 PHLDB1Q86UU1 1377 aa12.14□□□□□ -0.47
HDAC9-229ENST00000622668 DENND4BO75064 1496 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-229ENST00000622668 KIF21BO75037 1637 aa12.13□□□□□ -0.47
HDAC9-229ENST00000622668 CUL7Q14999 1698 aa12.13□□□□□ -0.47
HDAC9-229ENST00000622668 PLEKHH2Q8IVE3 1493 aa12.12□□□□□ -0.47
HDAC9-229ENST00000622668 NUTM2BA6NNL0 878 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-229ENST00000622668 NUTM2EB1AL46 878 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-229ENST00000622668 NUTM2AQ8IVF1 878 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-229ENST00000622668 MORC1Q86VD1 984 aa12.12□□□□□ -0.47
HDAC9-229ENST00000622668 DMRT2Q9Y5R5 561 aa12.12□□□□□ -0.47
HDAC9-229ENST00000622668 EPRSP07814 1512 aaKnown RBP12.12□□□□□ -0.47
HDAC9-229ENST00000622668 TERF2IPQ9NYB0 399 aa12.11□□□□□ -0.47
HDAC9-229ENST00000622668 LAS1LQ9Y4W2 734 aaKnown RBP12.11□□□□□ -0.47
HDAC9-229ENST00000622668 FYCO1Q9BQS8 1478 aa12.11□□□□□ -0.47
HDAC9-229ENST00000622668 MAPK8IP3Q9UPT6 1336 aa12.11□□□□□ -0.47
HDAC9-229ENST00000622668 TMEM132EQ6IEE7 984 aa12.11□□□□□ -0.47
HDAC9-229ENST00000622668 LRRC9Q6ZRR7 1453 aa12.11□□□□□ -0.47
HDAC9-229ENST00000622668 FBXO31Q5XUX0 539 aaPredicted RBP12.1□□□□□ -0.47
HDAC9-229ENST00000622668 SLC52A1Q9NWF4 448 aa12.1□□□□□ -0.47
HDAC9-229ENST00000622668 AKNAQ7Z591 1439 aa12.1□□□□□ -0.47
HDAC9-229ENST00000622668 TEX14Q8IWB6 1497 aa12.1□□□□□ -0.47
HDAC9-229ENST00000622668 FANCAO15360 1455 aa12.1□□□□□ -0.47
HDAC9-229ENST00000622668 AMPHP49418 695 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms